Genome biogeography reveals the intraspecific spread of adaptive mutations for a complex trait

Photorespiration connects C3and C4photosynthesis

(2016) Andrea Bräutigam et al.   JOURNAL OF EXPERIMENTAL BOTANY

Cross species selection scans identify components of C 4 photosynthesis in the grasses

(2016) Pu Huang et al.   JOURNAL OF EXPERIMENTAL BOTANY

A portrait of the C4photosynthetic family on the 50th anniversary of its discovery: species number, evolutionary lineages, and Hall of Fame

(2016) Rowan F. Sage   JOURNAL OF EXPERIMENTAL BOTANY

Genome evolution of ferns: evidence for relative stasis of genome size across the fern phylogeny

(2016) James Clark et al.   NEW PHYTOLOGIST

Evolutionary implications of C3-C4intermediates in the grassAlloteropsis semialata

(2016) Marjorie R. Lundgren et al.   PLANT CELL AND ENVIRONMENT

Photosynthetic innovation broadens the niche within a single species

(2015) Marjorie R. Lundgren et al.   ECOLOGY LETTERS

Evolutionary History of Blepharis (Acanthaceae) and the Origin of C4 Photosynthesis in Section Acanthodium

(2015) Amanda E. Fisher et al.   INTERNATIONAL JOURNAL OF PLANT SCIENCES

Genetic Enablers Underlying the Clustered Evolutionary Origins of C4 Photosynthesis in Angiosperms

(2015) Pascal-Antoine Christin et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome skimming for next-generation biodiversity analysis

(2015) Steven Dodsworth   TRENDS IN PLANT SCIENCE

Is gene flow the most important evolutionary force in plants?

(2014) Norman C. Ellstrand   AMERICAN JOURNAL OF BOTANY

ANGSD: Analysis of Next Generation Sequencing Data

(2014) Thorfinn Sand Korneliussen et al.   BMC BIOINFORMATICS

Modular Skeletal Evolution in Sticklebacks Is Controlled by Additive and Clustered Quantitative Trait Loci

(2014) Craig T. Miller et al.   GENETICS

Biogeographically distinct controls on C3and C4grass distributions: merging community and physiological ecology

(2014) Daniel M. Griffith et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

From museums to genomics: old herbarium specimens shed light on a C3 to C4 transition

(2014) Guillaume Besnard et al.   JOURNAL OF EXPERIMENTAL BOTANY

The evolutionary ecology of C4plants

(2014) Pascal-Antoine Christin et al.   NEW PHYTOLOGIST

The role of photorespiration during the evolution of C4 photosynthesis in the genus Flaveria

(2014) Julia Mallmann et al.   eLife

Predicting C4 Photosynthesis Evolution: Modular, Individually Adaptive Steps on a Mount Fuji Fitness Landscape

(2013) David Heckmann et al.   CELL

Quantifying Population Genetic Differentiation from Next-Generation Sequencing Data

(2013) Matteo Fumagalli et al.   GENETICS

Parallel Recruitment of Multiple Genes into C4 Photosynthesis

(2013) Pascal-Antoine Christin et al.   Genome Biology and Evolution

Molecular Dating, Evolutionary Rates, and the Age of the Grasses

(2013) P.-A. Christin et al.   SYSTEMATIC BIOLOGY

The Genomic Signature of Crop-Wild Introgression in Maize

(2013) Matthew B. Hufford et al.   PLoS Genetics

Phenotypic landscape inference reveals multiple evolutionary paths to C4 photosynthesis

(2013) Ben P Williams et al.   eLife

Photorespiration and the Evolution of C4Photosynthesis

(2012) Rowan F. Sage et al.   Annual Review of Plant Biology

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Adaptive Evolution of C4 Photosynthesis through Recurrent Lateral Gene Transfer

(2012) Pascal-Antoine Christin et al.   CURRENT BIOLOGY

The partitioning of Africa: statistically defined biogeographical regions in sub-Saharan Africa

(2012) H. Peter Linder et al.   JOURNAL OF BIOGEOGRAPHY

Population genomics based on low coverage sequencing: how low should we go?

(2012) C. Alex Buerkle et al.   MOLECULAR ECOLOGY

Reference genome sequence of the model plant Setaria

(2012) Jeffrey L Bennetzen et al.   NATURE BIOTECHNOLOGY

NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data

(2012) Ravi K. Patel et al.   PLoS One

Anatomical enablers and the evolution of C4photosynthesis in grasses

(2012) Pascal-Antoine Christin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Low-coverage sequencing: Implications for design of complex trait association studies

(2011) Y. Li et al.   GENOME RESEARCH

The C4 plant lineages of planet Earth

(2011) R. F. Sage et al.   JOURNAL OF EXPERIMENTAL BOTANY

Testing for Ancient Admixture between Closely Related Populations

(2011) Eric Y. Durand et al.   MOLECULAR BIOLOGY AND EVOLUTION

New grass phylogeny resolves deep evolutionary relationships and discovers C4 origins

(2011)   NEW PHYTOLOGIST

STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

(2011) Dent A. Earl et al.   Conservation Genetics Resources

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

COMPLEX EVOLUTIONARY TRANSITIONS AND THE SIGNIFICANCE OF C3-C4 INTERMEDIATE FORMS OF PHOTOSYNTHESIS IN MOLLUGINACEAE

(2010) Pascal-Antoine Christin et al.   EVOLUTION

Vegetation response to glacial–interglacial climate variability near Lake Malawi in the southern African tropics

(2010) Kristina R.M. Beuning et al.   PALAEOGEOGRAPHY PALAEOCLIMATOLOGY PALAEOECOLOGY

A Draft Sequence of the Neandertal Genome

(2010) R. E. Green et al.   SCIENCE

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Can phylogenetics identify C4 origins and reversals?

(2010) Pascal-Antoine Christin et al.   TRENDS IN ECOLOGY & EVOLUTION

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Phylogenomics of C4 Photosynthesis in Sedges (Cyperaceae): Multiple Appearances and Genetic Convergence

(2009) G. Besnard et al.   MOLECULAR BIOLOGY AND EVOLUTION

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

A molecular phylogeny of the genus Alloteropsis (Panicoideae, Poaceae) suggests an evolutionary reversion from C4 to C3 photosynthesis

(2008) Douglas G. Ibrahim et al.   ANNALS OF BOTANY

Dynamic Evolution of Oryza Genomes Is Revealed by Comparative Genomic Analysis of a Genus-Wide Vertical Data Set

(2008) J. S.S. Ammiraju et al.   PLANT CELL