Molecular mechanisms of postmating prezygotic reproductive isolation uncovered by transcriptome analysis

Genome-wide patterns of regulatory divergence revealed by introgression lines

(2016) Rafael F. Guerrero et al.   EVOLUTION

Phylogenomics Reveals Three Sources of Adaptive Variation during a Rapid Radiation

(2016) James B. Pease et al.   PLOS BIOLOGY

Testing the SI × SC rule: Pollen-pistil interactions in interspecific crosses between members of the tomato clade (Solanum section Lycopersicon , Solanaceae)

(2015) You Soon Baek et al.   AMERICAN JOURNAL OF BOTANY

Dissection of the style’s response to pollination using transcriptome profiling in self-compatible (Solanum pimpinellifolium) and self-incompatible (Solanum chilense) tomato species

(2015) Panfeng Zhao et al.   BMC PLANT BIOLOGY

Encoding Data Using Biological Principles: the Multisample Variant Format for Phylogenomics and Population Genomics

(2015) James Pease et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

HIGHLY METHYL ESTERIFIED SEEDSIs a Pectin Methyl Esterase Involved in Embryo Development

(2015) Gabriel Levesque-Tremblay et al.   PLANT PHYSIOLOGY

Tuning of pectin methylesterification: consequences for cell wall biomechanics and development

(2015) Gabriel Levesque-Tremblay et al.   PLANTA

A decade of pollen transcriptomics

(2015) Nicholas Rutley et al.   Plant Reproduction

Fertile approaches to dissecting mechanisms of premating and postmating prezygotic reproductive isolation

(2014) Leonie C Moyle et al.   CURRENT OPINION IN PLANT BIOLOGY

Hybrid Dysfunction and Physiological Compensation in Gene Expression

(2014) Felipe S. Barreto et al.   MOLECULAR BIOLOGY AND EVOLUTION

The genome of the stress-tolerant wild tomato species Solanum pennellii

(2014) Anthony Bolger et al.   NATURE GENETICS

Genomics and the origin of species

(2014) Ole Seehausen et al.   NATURE REVIEWS GENETICS

Restoring pistil-side self-incompatibility factors recapitulates an interspecific reproductive barrier between tomato species

(2014) Alejandro Tovar-Méndez et al.   PLANT JOURNAL

PECTIN METHYLESTERASE48 Is Involved in Arabidopsis Pollen Grain Germination

(2014) Christelle Leroux et al.   PLANT PHYSIOLOGY

Intraspecific sperm competition genes enforce post-mating species barriers in Drosophila

(2014) D. M. Castillo et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A Single Gene Affects Both Ecological Divergence and Mate Choice in Drosophila

(2014) H. Chung et al.   SCIENCE

The Genetic Architecture of Coordinately Evolving Male Wing Pigmentation and Courtship Behavior in Drosophila elegans and Drosophila gunungcola

(2014) Shu-Dan Yeh et al.   G3-Genes Genomes Genetics

voom: precision weights unlock linear model analysis tools for RNA-seq read counts

(2014) Charity W Law et al.   GENOME BIOLOGY

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

Speed dating, rejection, and finding the perfect mate: advice from flowering plants

(2013) Kristin M Beale et al.   CURRENT OPINION IN PLANT BIOLOGY

Meiotic Sex Chromosome Inactivation Is Disrupted in Sterile Hybrid Male House Mice

(2013) P. Campbell et al.   GENETICS

Male–Female Crosstalk during Pollen Germination, Tube Growth and Guidance, and Double Fertilization

(2013) Thomas Dresselhaus et al.   Molecular Plant

PELPIII: the class III pistil-specific extensin-likeNicotiana tabacumproteins are essential for interspecific incompatibility

(2013) Carrie A. Eberle et al.   PLANT JOURNAL

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Developmental onset of reproductive barriers and associated proteome changes in stigma/styles ofSolanum pennellii

(2012) Subbaiah C. Chalivendra et al.   JOURNAL OF EXPERIMENTAL BOTANY

A functional pectin methylesterase inhibitor protein (SolyPMEI) is expressed during tomato fruit ripening and interacts with PME-1

(2012) Ida Barbara Reca et al.   PLANT MOLECULAR BIOLOGY

NaStEP: A Proteinase Inhibitor Essential to Self-Incompatibility and a Positive Regulator of HT-B Stability in Nicotiana alata Pollen Tubes

(2012) K. Jimenez-Duran et al.   PLANT PHYSIOLOGY

Enabling proteomic studies with RNA-Seq: The proteome of tomato pollen as a test case

(2012) Gloria Lopez-Casado et al.   PROTEOMICS

The Genetic Basis of Pollinator Adaptation in a Sexually Deceptive Orchid

(2012) Shuqing Xu et al.   PLoS Genetics

Compatibility and incompatibility in S-RNase-based systems

(2011) Bruce McClure et al.   ANNALS OF BOTANY

Speciation Genes in Free-Spawning Marine Invertebrates

(2011) H. A. Lessios   INTEGRATIVE AND COMPARATIVE BIOLOGY

Cysteine-Rich Peptides (CRPs) mediate diverse aspects of cell-cell communication in plant reproduction and development

(2011) E. Marshall et al.   JOURNAL OF EXPERIMENTAL BOTANY

Identification of two genes causing reinforcement in the Texas wildflower Phlox drummondii

(2011) Robin Hopkins et al.   NATURE

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

A novel actin-microtubule cross-linking kinesin, NtKCH, functions in cell expansion and division

(2011) Jan Klotz et al.   NEW PHYTOLOGIST

Whole Genome Analysis of Gene Expression Reveals Coordinated Activation of Signaling and Metabolic Pathways during Pollen-Pistil Interactions in Arabidopsis

(2011) L. C. Boavida et al.   PLANT PHYSIOLOGY

Speciation genes in plants

(2010) Loren H. Rieseberg et al.   ANNALS OF BOTANY

Molecular evidence for increased regulatory conservation during metamorphosis, and against deleterious cascading effects of hybrid breakdown in Drosophila

(2010) Carlo G Artieri et al.   BMC BIOLOGY

Transcriptome-wide signature of hybrid breakdown associated with intrinsic reproductive isolation in lake whitefish species pairs (Coregonus spp. Salmonidae)

(2010) S Renaut et al.   HEREDITY

A kinesin with calponin-homology domain is involved in premitotic nuclear migration

(2010) Nicole Frey et al.   JOURNAL OF EXPERIMENTAL BOTANY

The molecular evolutionary basis of species formation

(2010) Daven C. Presgraves   NATURE REVIEWS GENETICS

Multiple features that distinguish unilateral incongruity and self-incompatibility in the tomato clade

(2010) Paul A. Covey et al.   PLANT JOURNAL

A Pollen Factor Linking Inter- and Intraspecific Pollen Rejection in Tomato

(2010) W. Li et al.   SCIENCE

Interspecific reproductive barriers in the tomato clade: opportunities to decipher mechanisms of reproductive isolation

(2010) Patricia A. Bedinger et al.   SEXUAL PLANT REPRODUCTION

Widespread Over-Expression of the X Chromosome in Sterile F1 Hybrid Mice

(2010) Jeffrey M. Good et al.   PLoS Genetics

The Role of Animal Pollination in Plant Speciation: Integrating Ecology, Geography, and Genetics

(2009) Kathleen M. Kay et al.   Annual Review of Ecology Evolution and Systematics

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Defensin-like polypeptide LUREs are pollen tube attractants secreted from synergid cells

(2009) Satohiro Okuda et al.   NATURE

Ontologizer 2.0--a multifunctional tool for GO term enrichment analysis and data exploration

(2008) S. Bauer et al.   BIOINFORMATICS

ECOLOGICAL AND EVOLUTIONARY GENOMICS IN THE WILD TOMATOES (SOLANUM SECT. LYCOPERSICON)

(2008) Leonie C. Moyle   EVOLUTION

Comparative Genetics of Hybrid Incompatibility: Sterility in Two Solanum Species Crosses

(2008) L. C. Moyle et al.   GENETICS

Pollination in Nicotiana alata stimulates synthesis and transfer to the stigmatic surface of NaStEP, a vacuolar Kunitz proteinase inhibitor homologue

(2008) Grethel Yanet Busot et al.   JOURNAL OF EXPERIMENTAL BOTANY

The strength and genetic basis of reproductive isolating barriers in flowering plants

(2008) D. B Lowry et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The biochemistry and biology of extracellular plant lipid-transfer proteins (LTPs)

(2007) Trevor H. Yeats et al.   PROTEIN SCIENCE