Divergence maintained by climatic selection despite recurrent gene flow: a case study ofCastanopsis carlesii(Fagaceae)

DIYABC v2.0: a software to make approximate Bayesian computation inferences about population history using single nucleotide polymorphism, DNA sequence and microsatellite data

(2014) Jean-Marie Cornuet et al.   BIOINFORMATICS

Footprints of divergent selection in natural populations of Castanopsis fargesii (Fagaceae)

(2014) C Li et al.   HEREDITY

Divergence with gene flow within the recent chipmunk radiation (Tamias)

(2014) J Sullivan et al.   HEREDITY

Phylogeography of Quercus glauca (Fagaceae), a dominant tree of East Asian subtropical evergreen forests, based on three chloroplast DNA interspace sequences

(2014) Jin Xu et al.   Tree Genetics & Genomes

Chloroplast diversity and population differentiation of Castanopsis fargesii (Fagaceae): a dominant tree species in evergreen broad-leaved forest of subtropical China

(2014) Ye Sun et al.   Tree Genetics & Genomes

Geographic Mode of Speciation and Genomic Divergence

(2013) Jeffrey L. Feder et al.   Annual Review of Ecology Evolution and Systematics

A practical guide to MaxEnt for modeling species’ distributions: what it does, and why inputs and settings matter

(2013) Cory Merow et al.   ECOGRAPHY

Genome-wide association studies and prediction of 17 traits related to phenology, biomass and cell wall composition in the energy grassMiscanthus sinensis

(2013) Gancho T. Slavov et al.   NEW PHYTOLOGIST

Comparative phylogeography of two sympatric beeches in subtropical China: Species-specific geographic mosaic of lineages

(2013) Zhi-Yong Zhang et al.   Ecology and Evolution

Local Adaptation along Smooth Ecological Gradients Causes Phylogeographic Breaks and Phenotypic Clustering

(2012) Darren E. Irwin   AMERICAN NATURALIST

Collinearity: a review of methods to deal with it and a simulation study evaluating their performance

(2012) Carsten F. Dormann et al.   ECOGRAPHY

Phylogeography of speciation: allopatric divergence and secondary contact between outcrossing and selfingClarkia

(2012) JAMES B. PETTENGILL et al.   MOLECULAR ECOLOGY

Measuring ecological niche overlap from occurrence and spatial environmental data

(2011) Olivier Broennimann et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

(2011) Dent A. Earl et al.   Conservation Genetics Resources

A statistical explanation of MaxEnt for ecologists

(2010) Jane Elith et al.   DIVERSITY AND DISTRIBUTIONS

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Genetic diversity, structure, and demographic change in tanoak, Lithocarpus densiflorus (Fagaceae), the most susceptible species to sudden oak death in California

(2009) Alejandro Nettel et al.   AMERICAN JOURNAL OF BOTANY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

DISENTANGLING THE EFFECTS OF EVOLUTIONARY, DEMOGRAPHIC, AND ENVIRONMENTAL FACTORS INFLUENCING GENETIC STRUCTURE OF NATURAL POPULATIONS: ATLANTIC HERRING AS A CASE STUDY

(2009) Oscar E. Gaggiotti et al.   EVOLUTION

Divergent selection and heterogeneous genomic divergence

(2009) PATRIK NOSIL et al.   MOLECULAR ECOLOGY

Natural selection in action during speciation

(2009) S. Via   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

ENVIRONMENTAL NICHE EQUIVALENCY VERSUS CONSERVATISM: QUANTITATIVE APPROACHES TO NICHE EVOLUTION

(2008) Dan L. Warren et al.   EVOLUTION

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS

Recent divergence with gene flow in Tennessee cave salamanders (Plethodontidae:Gyrinophilus) inferred from gene genealogies

(2008) MATTHEW L. NIEMILLER et al.   MOLECULAR ECOLOGY

Speciation with gene flow could be common

(2008) PATRIK NOSIL   MOLECULAR ECOLOGY

Landscape genetic analyses reveal cryptic population structure and putative selection gradients in a large-scale estuarine environment

(2008) R. J. SCOTT McCAIRNS et al.   MOLECULAR ECOLOGY

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One