Effects of sample size, data quality, and species response in environmental space on modeling species distributions

Unveiling the transition from niche to dispersal assembly in ecology

(2023) Lynette H. L. Loke et al.   NATURE

Scale-sensitivity in the measurement and interpretation of environmental niches

(2023) Muyang Lu et al.   TRENDS IN ECOLOGY & EVOLUTION

Regional occupancy increases for widespread species but decreases for narrowly distributed species in metacommunity time series

(2023) Wu-Bing Xu et al.   Nature Communications

Machine learning and deep learning—A review for ecologists

(2023) Maximilian Pichler et al.   Methods in Ecology and Evolution

Toward a cohesive understanding of ecological complexity

(2023) Federico Riva et al.   Science Advances

Diversity–stability relationships across organism groups and ecosystem types become decoupled across spatial scales

(2023) Nathan I. Wisnoski et al.   ECOLOGY

The geography of climate and the global patterns of species diversity

(2023) Marco Túlio P. Coelho et al.   NATURE

The importance of including phenology when modelling species ecological niche

(2022) Raquel Ponti et al.   ECOGRAPHY

Correcting for size bias in electrofishing removal samples

(2022) Ian A. Richter et al.   ECOLOGICAL MODELLING

Spatiotemporal modelling of abundance from multiple data sources in an integrated spatial distribution model

(2022) Nicolas Strebel et al.   JOURNAL OF BIOGEOGRAPHY

Projecting species distributions using fishery‐dependent data

(2022) Melissa A. Karp et al.   FISH AND FISHERIES

Positional errors in species distribution modelling are not overcome by the coarser grains of analysis

(2022) Lukáš Gábor et al.   Methods in Ecology and Evolution

Models with higher effective dimensions tend to produce more uncertain estimates

(2022) Arnald Puy et al.   Science Advances

Cross validation for model selection: A review with examples from ecology

(2022) Luke A. Yates et al.   ECOLOGICAL MONOGRAPHS

A unifying framework for quantifying and comparing n‐dimensional hypervolumes

(2021) Muyang Lu et al.   Methods in Ecology and Evolution

Improved understanding and prediction of freshwater fish communities through the use of joint species distribution models

(2020) Tyler Wagner et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

On the problem of modeling a fundamental niche from occurrence data

(2019) Laura Jiménez et al.   ECOLOGICAL MODELLING

Developing spatio-temporal models using multiple data types for evaluating population trends and habitat usage

(2019) Arnaud Grüss et al.   ICES JOURNAL OF MARINE SCIENCE

Better Model Transfers Require Knowledge of Mechanisms

(2019) Phil J. Bouchet et al.   TRENDS IN ECOLOGY & EVOLUTION

Testing methods in species distribution modelling using virtual species: what have we learnt and what are we missing?

(2019) Christine N. Meynard et al.   ECOGRAPHY

Applications for deep learning in ecology

(2019) Sylvain Christin et al.   Methods in Ecology and Evolution

The effect of sample size on the accuracy of species distribution models: considering both presences and pseudo-absences or background sites

(2018) Canran Liu et al.   ECOGRAPHY

A geostatistical state-space model of animal densities for stream networks

(2018) Daniel J. Hocking et al.   ECOLOGICAL APPLICATIONS

Modeling marine pelagic fish species spatiotemporal distributions utilizing a maximum entropy approach

(2018) Lifei Wang et al.   FISHERIES OCEANOGRAPHY

Without quality presence-absence data, discrimination metrics such as TSS can be misleading measures of model performance

(2018) Boris Leroy et al.   JOURNAL OF BIOGEOGRAPHY

Species distribution model transferability and model grain size – finer may not always be better

(2018) Syed Amir Manzoor et al.   Scientific Reports

Outstanding Challenges in the Transferability of Ecological Models

(2018) Katherine L. Yates et al.   TRENDS IN ECOLOGY & EVOLUTION

Forecast skill for predicting distribution shifts: A retrospective experiment for marine fishes in the Eastern Bering Sea

(2018) James T. Thorson   FISH AND FISHERIES

Guidance for decisions using the Vector Autoregressive Spatio-Temporal (VAST) package in stock, ecosystem, habitat and climate assessments

(2018) James T. Thorson   FISHERIES RESEARCH

Marine species distribution shifts on the U.S. Northeast Continental Shelf under continued ocean warming

(2017) Kristin M. Kleisner et al.   PROGRESS IN OCEANOGRAPHY

Multi-scale habitat selection modeling: a review and outlook

(2016) Kevin McGarigal et al.   LANDSCAPE ECOLOGY

Fast and flexible Bayesian species distribution modelling using Gaussian processes

(2016) Nick Golding et al.   Methods in Ecology and Evolution

spThin: an R package for spatial thinning of species occurrence records for use in ecological niche models

(2015) Matthew E. Aiello-Lammens et al.   ECOGRAPHY

Flow management and fish density regulate salmonid recruitment and adult size in tailwaters across western North America

(2015) Kimberly L. Dibble et al.   ECOLOGICAL APPLICATIONS

Environmental controls on spatial patterns in the long-term persistence of giant kelp in central California

(2015) Mary Alida Young et al.   ECOLOGY

To predict the niche, model colonization and extinction

(2015) Charles B. Yackulic et al.   ECOLOGY

Quality of presence data determines species distribution model performance: a novel index to evaluate data quality

(2015) Songlin Fei et al.   LANDSCAPE ECOLOGY

What determines the spatial extent of landscape effects on species?

(2015) Paul Miguet et al.   LANDSCAPE ECOLOGY

The scaling of geographic ranges: implications for species distribution models

(2015) Charles B. Yackulic et al.   LANDSCAPE ECOLOGY

No silver bullets in correlative ecological niche modelling: insights from testing among many potential algorithms for niche estimation

(2015) Huijie Qiao et al.   Methods in Ecology and Evolution

Shaping up model transferability and generality of species distribution modeling for predicting invasions: implications from a study on Bythotrephes longimanus

(2014) Lifei Wang et al.   BIOLOGICAL INVASIONS

The effects of phenotypic plasticity and local adaptation on forecasts of species range shifts under climate change

(2014) Fernando Valladares et al.   ECOLOGY LETTERS

Towards a better understanding of potential impacts of climate change on marine species distribution: a multiscale modelling approach

(2014) Tarek Hattab et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Sampling bias inverts ecogeographical relationships in island reptiles

(2014) Gentile Francesco Ficetola et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Climatic niche shifts between species' native and naturalized ranges raise concern for ecological forecasts during invasions and climate change

(2014) Regan Early et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Virtual species distribution models

(2014) Jennifer A. Miller   PROGRESS IN PHYSICAL GEOGRAPHY

Measuring the relative effect of factors affecting species distribution model predictions

(2014) Emeric Thibaud et al.   Methods in Ecology and Evolution

Species distribution models in conservation biogeography: developments and challenges

(2013) Janet Franklin   DIVERSITY AND DISTRIBUTIONS

Inference from presence-only data; the ongoing controversy

(2013) Trevor Hastie et al.   ECOGRAPHY

The roles of competition and habitat in the dynamics of populations and species distributions

(2013) Charles B. Yackulic et al.   ECOLOGY

Dual impacts of climate change: forest migration and turnover through life history

(2013) Kai Zhu et al.   GLOBAL CHANGE BIOLOGY

Niche syndromes, species extinction risks, and management under climate change

(2013) Dov F. Sax et al.   TRENDS IN ECOLOGY & EVOLUTION

Evaluation and amelioration of computer-aided diagnosis with artificial neural networks utilizing small-sized sample sets

(2012) K.Y. Liu et al.   Biomedical Signal Processing and Control

Predicting the Geographic Distribution of a Species from Presence-Only Data Subject to Detection Errors

(2012) Robert M. Dorazio   BIOMETRICS

Biotic interactions influence the projected distribution of a specialist mammal under climate change

(2012) Brooke L. Bateman et al.   DIVERSITY AND DISTRIBUTIONS

Discrimination capacity in species distribution models depends on the representativeness of the environmental domain

(2012) Alberto Jiménez-Valverde et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Joint estimation of habitat dynamics and species interactions: disturbance reduces co-occurrence of non-native predators with an endangered toad

(2012) David A. W. Miller et al.   JOURNAL OF ANIMAL ECOLOGY

Using virtual species to study species distributions and model performance

(2012) Christine N. Meynard et al.   JOURNAL OF BIOGEOGRAPHY

Likelihood analysis of species occurrence probability from presence-only data for modelling species distributions

(2012) J. Andrew Royle et al.   Methods in Ecology and Evolution

Presence-only modelling using MAXENT: when can we trust the inferences?

(2012) Charles B. Yackulic et al.   Methods in Ecology and Evolution

Assessing transferability of ecological models: an underappreciated aspect of statistical validation

(2012) Seth J. Wenger et al.   Methods in Ecology and Evolution

Modeling the establishment of invasive species: habitat and biotic interactions influencing the establishment of Bythotrephes longimanus

(2011) Lifei Wang et al.   BIOLOGICAL INVASIONS

Detection probabilities of two introduced frogs in Hawaii: implications for assessing non-native species distributions

(2011) Christina A. Olson et al.   BIOLOGICAL INVASIONS

Spatially explicit estimation of occupancy, detection probability and survey effort needed to inform conservation planning

(2011) Pedro P. Olea et al.   DIVERSITY AND DISTRIBUTIONS

Random-effects ordination: describing and predicting multivariate correlations and co-occurrences

(2011) Steven C. Walker et al.   ECOLOGICAL MONOGRAPHS

Influence of land use on water quality in a tropical landscape: a multi-scale analysis

(2011) María Uriarte et al.   LANDSCAPE ECOLOGY

Assessing the environmental requirements of invaders using ensembles of distribution models

(2010) César Capinha et al.   DIVERSITY AND DISTRIBUTIONS

A statistical explanation of MaxEnt for ecologists

(2010) Jane Elith et al.   DIVERSITY AND DISTRIBUTIONS

Measuring and comparing the accuracy of species distribution models with presence-absence data

(2010) Canran Liu et al.   ECOGRAPHY

Measures, perceptions and scaling patterns of aggregated species distributions

(2010) Cang Hui et al.   ECOGRAPHY

A comparative approach to understanding factors limiting abundance patterns and distributions in a fig tree-fig wasp mutualism

(2010) Marié Warren et al.   ECOGRAPHY

Assessing the effect of prevalence on the predictive performance of species distribution models using simulated data

(2010) Truly Santika   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Species Distribution Models: Ecological Explanation and Prediction Across Space and Time

(2009) Jane Elith et al.   Annual Review of Ecology Evolution and Systematics

Do they? How do they? WHY do they differ? On finding reasons for differing performances of species distribution models

(2009) Jane Elith et al.   ECOGRAPHY

Static species distribution models in dynamically changing systems: how good can predictions really be?

(2009) Damaris Zurell et al.   ECOGRAPHY

Sample selection bias and presence-only distribution models: implications for background and pseudo-absence data

(2009) Steven J. Phillips et al.   ECOLOGICAL APPLICATIONS

The effect of species response form on species distribution model prediction and inference

(2009) Truly Santika et al.   ECOLOGICAL MODELLING

Spatial prediction of species’ distributions from occurrence-only records: combining point pattern analysis, ENFA and regression-kriging

(2009) Tomislav Hengl et al.   ECOLOGICAL MODELLING

Generalized linear mixed models: a practical guide for ecology and evolution

(2009) Benjamin M. Bolker et al.   TRENDS IN ECOLOGY & EVOLUTION

Spatial analysis improves species distribution modelling during range expansion

(2008) P. De Marco et al.   Biology Letters

Not as good as they seem: the importance of concepts in species distribution modelling

(2008) Alberto Jiménez-Valverde et al.   DIVERSITY AND DISTRIBUTIONS

Effects of sample size on the performance of species distribution models

(2008) M. S. Wisz et al.   DIVERSITY AND DISTRIBUTIONS

Modelling directional spatial processes in ecological data

(2008) F. Guillaume Blanchet et al.   ECOLOGICAL MODELLING

Climate change hastens the turnover of stream fish assemblages

(2008) LAËTITIA BUISSON et al.   GLOBAL CHANGE BIOLOGY

A working guide to boosted regression trees

(2008) J. Elith et al.   JOURNAL OF ANIMAL ECOLOGY

GIS: biodiversity applications

(2008) G.M. Foody   PROGRESS IN PHYSICAL GEOGRAPHY

Integrating GIS-based environmental data into evolutionary biology

(2008) Kenneth H. Kozak et al.   TRENDS IN ECOLOGY & EVOLUTION