Orphan Crops Browser: a bridge between model and orphan crops

How cell wall complexity influences saccharification efficiency inMiscanthus sinensis

(2015) Amanda P. De Souza et al.   JOURNAL OF EXPERIMENTAL BOTANY

Spatial gradients in cell wall composition and transcriptional profiles along elongating maize internodes

(2014) Qisen Zhang et al.   BMC PLANT BIOLOGY

Sequencing of transcriptomes from two Miscanthus species reveals functional specificity in rhizomes, and clarifies evolutionary relationships

(2014) Changsoo Kim et al.   BMC PLANT BIOLOGY

Maize Gene Atlas Developed by RNA Sequencing and Comparative Evaluation of Transcriptomes Based on RNA Sequencing and Microarrays

(2014) Rajandeep S. Sekhon et al.   PLoS One

A secreted Ustilago maydis effector promotes virulence by targeting anthocyanin biosynthesis in maize

(2014) Shigeyuki Tanaka et al.   eLife

Effect of Maize Biomass Composition on the Optimization of Dilute-Acid Pretreatments and Enzymatic Saccharification

(2013) Andres F. Torres et al.   BioEnergy Research

A detailed gene expression study of the Miscanthus genus reveals changes in the transcriptome associated with the rejuvenation of spring rhizomes

(2013) Adam Barling et al.   BMC GENOMICS

Downregulation of caffeoyl-CoA O-methyltransferase (CCoAOMT) by RNA interference leads to reduced lignin production in maize straw

(2013) Xiaoyu Li et al.   GENETICS AND MOLECULAR BIOLOGY

Expression of SofLAC, a new laccase in sugarcane, restores lignin content but not S:G ratio of Arabidopsis lac17 mutant

(2013) Igor Cesarino et al.   JOURNAL OF EXPERIMENTAL BOTANY

Root ethylene signalling is involved in Miscanthus sinensis growth promotion by the bacterial endophyte Herbaspirillum frisingense GSF30T

(2013) Daniel Straub et al.   JOURNAL OF EXPERIMENTAL BOTANY

Transcriptomic and proteomic comparison of two Miscanthus genotypes: high biomass correlates with investment in primary carbon assimilation and decreased secondary metabolism

(2013) Daniel Straub et al.   PLANT AND SOIL

Natural Variation in Maize Aphid Resistance Is Associated with 2,4-Dihydroxy-7-Methoxy-1,4-Benzoxazin-3-One Glucoside Methyltransferase Activity

(2013) L. N. Meihls et al.   PLANT CELL

Lignification in Sugarcane: Biochemical Characterization, Gene Discovery, and Expression Analysis in Two Genotypes Contrasting for Lignin Content

(2013) A. Bottcher et al.   PLANT PHYSIOLOGY

Evaluation of Genome Sequencing Quality in Selected Plant Species Using Expressed Sequence Tags

(2013) Lingfei Shangguan et al.   PLoS One

TRAPID: an efficient online tool for the functional and comparative analysis of de novo RNA-Seq transcriptomes

(2013) Michiel Van Bel et al.   GENOME BIOLOGY

A framework genetic map for Miscanthus sinensis from RNAseq-based markers shows recent tetraploidy

(2012) Kankshita Swaminathan et al.   BMC GENOMICS

Primer3—new capabilities and interfaces

(2012) Andreas Untergasser et al.   NUCLEIC ACIDS RESEARCH

RNAi suppression of lignin biosynthesis in sugarcane reduces recalcitrance for biofuel production from lignocellulosic biomass

(2012) Je Hyeong Jung et al.   PLANT BIOTECHNOLOGY JOURNAL

Transcriptome-Based Differentiation of Closely-Related Miscanthus Lines

(2012) Philippe Chouvarine et al.   PLoS One

High Resolution Genetic Mapping by Genome Sequencing Reveals Genome Duplication and Tetraploid Genetic Structure of the Diploid Miscanthus sinensis

(2012) Xue-Feng Ma et al.   PLoS One

SSR-based genetic maps of Miscanthus sinensis and M. sacchariflorus, and their comparison to sorghum

(2012) Changsoo Kim et al.   THEORETICAL AND APPLIED GENETICS

Identification of genes involved in cell wall biogenesis in grasses by differential gene expression profiling of elongating and non-elongating maize internodes

(2011) Maurice Bosch et al.   JOURNAL OF EXPERIMENTAL BOTANY

Characterization of a cinnamoyl-CoA reductase 1 (CCR1) mutant in maize: effects on lignification, fibre development, and global gene expression

(2011) Barek Tamasloukht et al.   JOURNAL OF EXPERIMENTAL BOTANY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

The Pfam protein families database

(2011) M. Punta et al.   NUCLEIC ACIDS RESEARCH

Downregulation of Cinnamyl-Alcohol Dehydrogenase in Switchgrass by RNA Silencing Results in Enhanced Glucose Release after Cellulase Treatment

(2011) Aaron J. Saathoff et al.   PLoS One

Structural changes in switchgrass lignin and hemicelluloses during pretreatments by NMR analysis

(2011) Reichel Samuel et al.   POLYMER DEGRADATION AND STABILITY

ETE: a python Environment for Tree Exploration

(2010) Jaime Huerta-Cepas et al.   BMC BIOINFORMATICS

Microcollinearity between autopolyploid sugarcane and diploid sorghum genomes

(2010) Jianping Wang et al.   BMC GENOMICS

Coordination of the maize transcriptome by a conserved circadian clock

(2010) Sadaf Khan et al.   BMC PLANT BIOLOGY

Understanding Lignification: Challenges Beyond Monolignol Biosynthesis

(2010) X. Li et al.   PLANT PHYSIOLOGY

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

Improving sugarcane for biofuel: engineering for an even better feedstock

(2009) ERIC LAM et al.   Global Change Biology Bioenergy

Models and orphans; concentration of the plant molecular life science research agenda

(2009) Koen Jonkers   SCIENTOMETRICS