Coevolution between Stop Codon Usage and Release Factors in Bacterial Species

Escherichia coli and Staphylococcus phages: effect of translation initiation efficiency on differential codon adaptation mediated by virulent and temperate lifestyles

(2015) Ramanandan Prabhakaran et al.   JOURNAL OF GENERAL VIROLOGY

The evolution of genomic GC content undergoes a rapid reversal within the genus Plasmodium

(2015) Hamid Nikbakht et al.   GENOME

A Major Controversy in Codon-Anticodon Adaptation Resolved by a New Codon Usage Index

(2014) Xuhua Xia   GENETICS

The Effect of Mutation and Selection on Codon Adaptation in Escherichia coli Bacteriophage

(2014) Shivapriya Chithambaram et al.   GENETICS

Comprehensive Analysis of Stop Codon Usage in Bacteria and Its Correlation with Release Factor Abundance

(2014) Gürkan Korkmaz et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Differential Codon Adaptation between dsDNA and ssDNA Phages in Escherichia coli

(2014) Shivapriya Chithambaram et al.   MOLECULAR BIOLOGY AND EVOLUTION

DAMBE5: A Comprehensive Software Package for Data Analysis in Molecular Biology and Evolution

(2013) Xuhua Xia   MOLECULAR BIOLOGY AND EVOLUTION

Stop codons in bacteria are not selectively equivalent

(2012) Inna S Povolotskaya et al.   Biology Direct

PaxDb, a Database of Protein Abundance Averages Across All Three Domains of Life

(2012) M. Wang et al.   MOLECULAR & CELLULAR PROTEOMICS

Contributions of Speed and Accuracy to Translational Selection in Bacteria

(2012) Wenqi Ran et al.   PLoS One

HIV-1 Modulates the tRNA Pool to Improve Translation Efficiency

(2011) A. van Weringh et al.   MOLECULAR BIOLOGY AND EVOLUTION

A General Model of Codon Bias Due to GC Mutational Bias

(2010) Gareth A. Palidwor et al.   PLoS One

Information-theoretic indices and an approximate significance test for testing the molecular clock hypothesis with genetic distances

(2009) Xuhua Xia   MOLECULAR PHYLOGENETICS AND EVOLUTION

The cost of wobble translation in fungal mitochondrial genomes: integration of two traditional hypotheses

(2008) Xuhua Xia   BMC EVOLUTIONARY BIOLOGY

An Extensive Study of Mutation and Selection on the Wobble Nucleotide in tRNA Anticodons in Fungal Mitochondrial Genomes

(2008) Malisa Carullo et al.   JOURNAL OF MOLECULAR EVOLUTION

GC skew in protein-coding genes between the leading and lagging strands in bacterial genomes: New substitution models incorporating strand bias

(2008) Antonio Marín et al.   JOURNAL OF THEORETICAL BIOLOGY

Coevolution of Codon Usage and tRNA Genes Leads to Alternative Stable States of Biased Codon Usage

(2008) P. G. Higgs et al.   MOLECULAR BIOLOGY AND EVOLUTION

Quantitative Effect of Suboptimal Codon Usage on Translational Efficiency of mRNA Encoding HIV-1 gag in Intact T Cells

(2008) Kholiswa C. Ngumbela et al.   PLoS One

Codon Usage in Mitochondrial Genomes: Distinguishing Context-Dependent Mutation from Translational Selection

(2007) W. Jia et al.   MOLECULAR BIOLOGY AND EVOLUTION