Source of CpG Depletion in the HIV-1 Genome

Structural basis of CpG and inhibitory DNA recognition by Toll-like receptor 9

(2015) Umeharu Ohto et al.   NATURE

Footprint of APOBEC3 on the Genome of Human Retroelements

(2013) F. Anwar et al.   JOURNAL OF VIROLOGY

NGSmethDB: an updated genome resource for high quality, single-cytosine resolution methylomes

(2013) Stefanie Geisen et al.   NUCLEIC ACIDS RESEARCH

CpG Usage in RNA Viruses: Data and Hypotheses

(2013) Xiaofei Cheng et al.   PLoS One

Epigenetic analysis of HIV-1 proviral genomes from infected individuals: Predominance of unmethylated CpG's

(2013) Stefanie Weber et al.   VIROLOGY

Paucity of HIV DNA Methylation in Latently Infected, Resting CD4+ T Cells from Infected Individuals Receiving Antiretroviral Therapy

(2012) J. Blazkova et al.   JOURNAL OF VIROLOGY

Functions of DNA methylation: islands, start sites, gene bodies and beyond

(2012) Peter A. Jones   NATURE REVIEWS GENETICS

The biased nucleotide composition of the HIV genome: a constant factor in a highly variable virus

(2012) Antoinette C van der Kuyl et al.   Retrovirology

APOBEC3G and APOBEC3F rarely co-mutate the same HIV genome

(2012) Diako Ebrahimi et al.   Retrovirology

Suppression of TLR9 Immunostimulatory Motifs in the Genome of a Gammaherpesvirus

(2011) A. C. Pezda et al.   JOURNAL OF IMMUNOLOGY

Oligonucleotide Motifs That Disappear during the Evolution of Influenza Virus in Humans Increase Alpha Interferon Secretion by Plasmacytoid Dendritic Cells

(2011) S. Jimenez-Baranda et al.   JOURNAL OF VIROLOGY

Differential Trends in the Codon Usage Patterns in HIV-1 Genes

(2011) Aridaman Pandit et al.   PLoS One

NGSmethDB: a database for next-generation sequencing single-cytosine-resolution DNA methylation data

(2010) M. Hackenberg et al.   NUCLEIC ACIDS RESEARCH

The DNA Methylome of Human Peripheral Blood Mononuclear Cells

(2010) Yingrui Li et al.   PLOS BIOLOGY

TLR-mediated immune activation in HIV

(2009) J. J. Chang et al.   BLOOD

Determinants of the Establishment of Human Immunodeficiency Virus Type 1 Latency

(2009) A. Duverger et al.   JOURNAL OF VIROLOGY

Patterns of Oligonucleotide Sequences in Viral and Host Cell RNA Identify Mediators of the Host Innate Immune System

(2009) Benjamin D. Greenbaum et al.   PLoS One

CpG Methylation Controls Reactivation of HIV from Latency

(2009) Jana Blazkova et al.   PLoS Pathogens

Genome-scale relationships between cytosine methylation and dinucleotide abundances in animals

(2008) Martin W. Simmen   GENOMICS

TLR9 traffics through the Golgi complex to localize to endolysosomes and respond to CpG DNA

(2008) Annapoorani Chockalingam et al.   IMMUNOLOGY AND CELL BIOLOGY

Patterns of Evolution and Host Gene Mimicry in Influenza and Other RNA Viruses

(2008) Benjamin D. Greenbaum et al.   PLoS Pathogens