Spatial Colocalization of Human Ohnolog Pairs Acts to Maintain Dosage-Balance

A Proteome-wide Fission Yeast Interactome Reveals Network Evolution Principles from Yeasts to Human

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Spatial features for Escherichia coli genome organization

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The support of human genetic evidence for approved drug indications

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Identification of Ohnolog Genes Originating from Whole Genome Duplication in Early Vertebrates, Based on Synteny Comparison across Multiple Genomes

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A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping

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Neighboring Genes Show Interchromosomal Colocalization after Their Separation

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Functional gene groups are concentrated within chromosomes, among chromosomes and in the nuclear space of the human genome

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COXPRESdb in 2015: coexpression database for animal species by DNA-microarray and RNAseq-based expression data with multiple quality assessment systems

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A high-resolution map of the three-dimensional chromatin interactome in human cells

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High-Resolution Mapping of the Spatial Organization of a Bacterial Chromosome

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Genome-wide deserts for copy number variation in vertebrates

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The Roles of Whole-Genome and Small-Scale Duplications in the Functional Specialization of Saccharomyces cerevisiae Genes

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Genome-scale analysis of interaction dynamics reveals organization of biological networks

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Spatial Organization of the Mouse Genome and Its Role in Recurrent Chromosomal Translocations

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Three-Dimensional Folding and Functional Organization Principles of the Drosophila Genome

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Topological domains in mammalian genomes identified by analysis of chromatin interactions

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Iterative correction of Hi-C data reveals hallmarks of chromosome organization

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Fast gapped-read alignment with Bowtie 2

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2R and remodeling of vertebrate signal transduction engine

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Contrasting patterns of evolution following whole genome versus tandem duplication events in Populus

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Probabilistic modeling of Hi-C contact maps eliminates systematic biases to characterize global chromosomal architecture

(2011) Eitan Yaffe et al.   NATURE GENETICS

Nuclear colocalization of transcription factor target genes strengthens coregulation in yeast

(2011) Zhiming Dai et al.   NUCLEIC ACIDS RESEARCH

Two-Phase Resolution of Polyploidy in theArabidopsisMetabolic Network Gives Rise to Relative and Absolute Dosage Constraints

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A three-dimensional model of the yeast genome

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Ohnologs in the human genome are dosage balanced and frequently associated with disease

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EVOLUTION FROM FISH TO MAMMALS BY GENE DUPLICATION

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The complex relationship of gene duplication and essentiality

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Fast Gene Ontology based clustering for microarray experiments

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