Novel diversity within Roseofilum (Desertifilaceae, Cyanobacteria) from marine benthic mats with description of four new species

Cryptic Diversity of Black Band Disease Cyanobacteria in Siderastrea siderea Corals Revealed by Chemical Ecology and Comparative Genome-Resolved Metagenomics

(2023) Julie L. Meyer et al.   Marine Drugs

Recognizing novel cyanobacterial diversity in marine benthic mats, with the description of Sirenicapillariaceae fam. nov., two new genera, Sirenicapillaria gen. nov. and Tigrinifilum gen. nov., and seven new species

(2022) David E. Berthold et al.   PHYCOLOGIA

Cyanobacterial mats as benthic reservoirs and vectors for coral black band disease pathogens

(2022) Ethan C. Cissell et al.   ECOLOGICAL APPLICATIONS

GTDB-Tk v2: memory friendly classification with the genome taxonomy database

(2022) Pierre-Alain Chaumeil et al.   BIOINFORMATICS

The novel marine cyanobacterium Nunduva sanctimaloensis sp. nov. (Nostocales, Cyanobacteria) from rocky shores and its reproduction through modified monocytes

(2022) David E. Berthold et al.   Fottea

An updated classification of cyanobacterial orders and families based on phylogenomic and polyphasic analysis

(2022) Otakar Strunecký et al.   JOURNAL OF PHYCOLOGY

The cyanobacterial taxis protein HmpF regulates type IV pilus activity in response to light

(2021) Thomas V. Harwood et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A method for achieving complete microbial genomes and improving bins from metagenomics data

(2021) Lauren M. Lui et al.   PLoS Computational Biology

GTDB: an ongoing census of bacterial and archaeal diversity through a phylogenetically consistent, rank normalized and complete genome-based taxonomy

(2021) Donovan H Parks et al.   NUCLEIC ACIDS RESEARCH

Diversity of bioactive compound content across 71 genera of marine, freshwater, and terrestrial cyanobacteria

(2021) I-Shuo Huang et al.   HARMFUL ALGAE

Shifting Boundaries: ecological and geographical range extension based on three new species in the cyanobacterial genera Aliterella , Cyanocohniella and Oculatella

(2020) Patrick Jung et al.   JOURNAL OF PHYCOLOGY

Limited Microcystin, Anatoxin and Cylindrospermopsin Production by Cyanobacteria from Microbial Mats in Cold Deserts

(2020) Nataliia Khomutovska et al.   Toxins

Preliminary Assessment of Microbial Community Structure of Wind-Tidal Flats in the Laguna Madre, Texas, USA

(2020) I.-Shuo Huang et al.   Biology-Basel

Johannesbaptistia floridana sp. nov. (Chroococcales, Cyanobacteria), a novel marine cyanobacterium from coastal South Florida (USA)

(2020) David E. Berthold et al.   Fottea

The occurrence of Affixifilum gen. nov. and N eolyngbya (Oscillatoriaceae) in South Florida (USA), with the description of A. floridanum sp. nov. and N. biscaynensis sp. nov

(2020) Forrest W. Lefler et al.   JOURNAL OF PHYCOLOGY

Shotgun metagenomic sequencing reveals the full taxonomic, trophic, and functional diversity of a coral reef benthic cyanobacterial mat from Bonaire, Caribbean Netherlands

(2020) Ethan C. Cissell et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Untangling filamentous marine cyanobacterial diversity from the coast of South Florida with the description of Vermifilaceae fam. nov. and three new genera: Leptochromothrix gen. nov., Ophiophycus gen. nov., and Vermifilum gen. nov.

(2020) David E. Berthold et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Chemical and Metagenomic Studies of the Lethal Black Band Disease of Corals Reveal Two Broadly Distributed, Redox-Sensitive Mixed Polyketide/Peptide Macrocycles

(2019) Sarath P. Gunasekera et al.   JOURNAL OF NATURAL PRODUCTS

RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference

(2019) Alexey M Kozlov et al.   BIOINFORMATICS

When is a lineage a species? A case study in Myxacorys gen. nov. (Synechococcales: Cyanobacteria) with the description of two new species from the Americas

(2019) Nicole Pietrasiak et al.   JOURNAL OF PHYCOLOGY

ModelTest-NG: A New and Scalable Tool for the Selection of DNA and Protein Evolutionary Models

(2019) Diego Darriba et al.   MOLECULAR BIOLOGY AND EVOLUTION

OUP accepted manuscript

(2018)   BIOINFORMATICS

The Coal Seam Microbiome (CSMB) reference set, a lingua franca for the microbial coal-to-methane community

(2018) Silas H.W. Vick et al.   INTERNATIONAL JOURNAL OF COAL GEOLOGY

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Toxic Cyanobacteria in Svalbard: Chemical Diversity of Microcystins Detected Using a Liquid Chromatography Mass Spectrometry Precursor Ion Screening Method

(2018) Julia Kleinteich et al.   Toxins

A revision of the genus Geitlerinema and a description of the genus Anagnostidinema gen. nov. (Oscillatoriophycidae, Cyanobacteria)

(2017) Otakar Strunecky et al.   Fottea

metaSPAdes: a new versatile metagenomic assembler

(2017) Sergey Nurk et al.   GENOME RESEARCH

Comparative Metagenomics of the Polymicrobial Black Band Disease of Corals

(2017) Julie L. Meyer et al.   Frontiers in Microbiology

A polyphasic taxonomic approach in isolated strains of Cyanobacteria from thermal springs of Greece

(2016) Panos Bravakos et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Genetic, morphological and growth characterisation of a newRoseofilumstrain (Oscillatoriales, Cyanobacteria) associated with coral black band disease

(2016) Patrick Buerger et al.   PeerJ

MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph

(2015) Dinghua Li et al.   BIOINFORMATICS

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

Microbiome shifts and the inhibition of quorum sensing by Black Band Disease cyanobacteria

(2015) Julie L Meyer et al.   ISME Journal

High dissolved organic carbon release by benthic cyanobacterial mats in a Caribbean reef ecosystem

(2015) Hannah J. Brocke et al.   Scientific Reports

MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities

(2015) Dongwan D. Kang et al.   PeerJ

Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences

(2014) Pablo Yarza et al.   NATURE REVIEWS MICROBIOLOGY

A review of current knowledge on toxic benthic freshwater cyanobacteria – Ecology, toxin production and risk management

(2013) Quiblier Catherine et al.   WATER RESEARCH

Phylogenetic stratigraphy in the Guerrero Negro hypersaline microbial mat

(2012) J Kirk Harris et al.   ISME Journal

Coral Black Band Disease Microbial Communities and Genotypic Variability of the Dominant Cyanobacteria (CD1C11)

(2011) James S Klaus et al.   BULLETIN OF MARINE SCIENCE

Fine structure analysis of black band disease (BBD) infected coral and coral exposed to the BBD toxins microcystin and sulfide

(2011) Aaron W. Miller et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

Nitrogen fixation by marine cyanobacteria

(2011) Jonathan P. Zehr   TRENDS IN MICROBIOLOGY

Climate change: Links to global expansion of harmful cyanobacteria

(2011) Hans W. Paerl et al.   WATER RESEARCH

Changes in sulfate-reducing bacterial populations during the onset of black band disease

(2010) David G Bourne et al.   ISME Journal

Black-band disease dynamics: Prevalence, incidence, and acclimatization to light

(2010) E.M. Muller et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Microbial phylogeny and diversity: Small subunit ribosomal RNA sequence analysis and beyond

(2010) J. Rajendhran et al.   MICROBIOLOGICAL RESEARCH

Sulfide, microcystin, and the etiology of black band disease

(2009) LL Richardson et al.   DISEASES OF AQUATIC ORGANISMS

Pseudoscillatoria coralii gen. nov., sp. nov., a cyanobacterium associated with coral black band disease (BBD)

(2009) D Rasoulouniriana et al.   DISEASES OF AQUATIC ORGANISMS

Successional changes in bacterial communities during the development of black band disease on the reef coral, Montipora hispida

(2009) Yui Sato et al.   ISME Journal