A Novel Systems-Biology Algorithm for the Analysis of Coordinated Protein Responses Using Quantitative Proteomics

β3 adrenergic receptor selective stimulation during ischemia/reperfusion improves cardiac function in translational models through inhibition of mPTP opening in cardiomyocytes

(2014) Jaime García-Prieto et al.   BASIC RESEARCH IN CARDIOLOGY

Multilayered Genetic and Omics Dissection of Mitochondrial Activity in a Mouse Reference Population

(2014) Yibo Wu et al.   CELL

General Statistical Framework for Quantitative Proteomics by Stable Isotope Labeling

(2014) Pedro Navarro et al.   JOURNAL OF PROTEOME RESEARCH

Revisiting Peptide Identification by High-Accuracy Mass Spectrometry: Problems Associated with the Use of Narrow Mass Precursor Windows

(2014) Elena Bonzon-Kulichenko et al.   JOURNAL OF PROTEOME RESEARCH

STRING v10: protein–protein interaction networks, integrated over the tree of life

(2014) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Nuclear Envelope Lamin-A Couples Actin Dynamics with Immunological Synapse Architecture and T Cell Activation

(2014) J. M. Gonzalez-Granado et al.   Science Signaling

Cyclooxygenase-2–Derived Prostaglandin E 2 Promotes Injury-Induced Vascular Neointimal Hyperplasia Through the E-prostanoid 3 Receptor

(2013) Jian Zhang et al.   CIRCULATION RESEARCH

Self-Renewing Human Bone Marrow Mesenspheres Promote Hematopoietic Stem Cell Expansion

(2013) Joan Isern et al.   Cell Reports

Differential Remodeling of Actin Cytoskeleton Architecture by Profilin Isoforms Leads to Distinct Effects on Cell Migration and Invasion

(2012) Ghassan Mouneimne et al.   CANCER CELL

The vascular smooth muscle cell in arterial pathology: a cell that can take on multiple roles

(2012) P. Lacolley et al.   CARDIOVASCULAR RESEARCH

Quantitative Analysis of Fission Yeast Transcriptomes and Proteomes in Proliferating and Quiescent Cells

(2012) Samuel Marguerat et al.   CELL

The Proteomics Identifications (PRIDE) database and associated tools: status in 2013

(2012) Juan Antonio Vizcaíno et al.   NUCLEIC ACIDS RESEARCH

Highly Coordinated Proteome Dynamics during Reprogramming of Somatic Cells to Pluripotency

(2012) Jenny Hansson et al.   Cell Reports

Ten Years of Pathway Analysis: Current Approaches and Outstanding Challenges

(2012) Purvesh Khatri et al.   PLoS Computational Biology

Transcription factors and coactivators controlling nutrient and hormonal regulation of hepatic gluconeogenesis

(2011) Sarawut Jitrapakdee   INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY

Histone acetylation is essential for ANG-II-induced IGF-IIR gene expression in H9c2 cardiomyoblast cells and pathologically hypertensive rat heart

(2011) Chun-Hsien Chu et al.   JOURNAL OF CELLULAR PHYSIOLOGY

Global quantification of mammalian gene expression control

(2011) Björn Schwanhäusser et al.   NATURE

Orphan nuclear receptor small heterodimer partner inhibits angiotensin II-stimulated PAI-1 expression in vascular smooth muscle cells

(2010) Kyeong-Min Lee et al.   EXPERIMENTAL AND MOLECULAR MEDICINE

Homocysteine induces smooth muscle cell proliferation through differential regulation of cyclins A and D1 expression

(2010) Jui-Kun Chiang et al.   JOURNAL OF CELLULAR PHYSIOLOGY

Transcription of functionally related constitutive genes is not coordinated

(2010) Saumil J Gandhi et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Is Glutamine a Conditionally Essential Amino Acid?

(2010) Janet M. Lacey et al.   NUTRITION REVIEWS

GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists

(2009) Eran Eden et al.   BMC BIOINFORMATICS

Efficiency of complex production in changing environment

(2009) Shai Carmi et al.   BMC Systems Biology

Detecting coordinated regulation of multi-protein complexes using logic analysis of gene expression

(2009) Einat Sprinzak et al.   BMC Systems Biology

A Novel Form of Motility in Filopodia Revealed by Imaging Myosin-X at the Single-Molecule Level

(2009) Michael L. Kerber et al.   CURRENT BIOLOGY

A Refined Method To Calculate False Discovery Rates for Peptide Identification Using Decoy Databases

(2009) Pedro Navarro et al.   JOURNAL OF PROTEOME RESEARCH

Statistical Model to Analyze Quantitative Proteomics Data Obtained by18O/16O Labeling and Linear Ion Trap Mass Spectrometry

(2009) Inmaculada Jorge et al.   MOLECULAR & CELLULAR PROTEOMICS

Isolation of mitochondria-associated membranes and mitochondria from animal tissues and cells

(2009) Mariusz R Wieckowski et al.   Nature Protocols

Understanding Abdominal Aortic Aneurysm

(2009) Neal L. Weintraub   NEW ENGLAND JOURNAL OF MEDICINE

Signaling dynamics of the KSR1 scaffold complex

(2009) M. M. McKay et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Properties of Average Score Distributions of SEQUEST

(2008) Salvador Martínez-Bartolomé et al.   MOLECULAR & CELLULAR PROTEOMICS

NPRA-mediated suppression of AngII-induced ROS production contribute to the antiproliferative effects of B-type natriuretic peptide in VSMC

(2008) Pan Gao et al.   MOLECULAR AND CELLULAR BIOCHEMISTRY

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH

Dietary Components Impact Histone Modifications and Cancer Risk

(2008) Cindy D. Davis et al.   NUTRITION REVIEWS

Mechano-regulated Tenascin-C orchestrates muscle repair

(2008) M. Fluck et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Beyond the Durfee square: Enhancing the h-index to score total publication output

(2008) Thomas R. Anderson et al.   SCIENTOMETRICS

Expression Pattern, Regulation, and Functions of Methionine Adenosyltransferase 2β Splicing Variants in Hepatoma Cells

(2007) Heping Yang et al.   GASTROENTEROLOGY