Label-free Quantification of Proteins in Single Embryonic Cells with Neural Fate in the Cleavage-Stage Frog (Xenopus laevis) Embryo using Capillary Electrophoresis Electrospray Ionization High-Resolution Mass Spectrometry (CE-ESI-HRMS)

Single-cell mass spectrometry with multi-solvent extraction identifies metabolic differences between left and right blastomeres in the 8-cell frog (Xenopus) embryo

(2016) Rosemary M. Onjiko et al.   ANALYST

Single-Cell Mass Spectrometry for Discovery Proteomics: Quantifying Translational Cell Heterogeneity in the 16-Cell Frog (Xenopus ) Embryo

(2016) Camille Lombard-Banek et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Over 2300 Phosphorylated Peptide Identifications with Single-Shot Capillary Zone Electrophoresis-Tandem Mass Spectrometry in a 100 min Separation

(2015) Katelyn R. Ludwig et al.   ANALYTICAL CHEMISTRY

Classification of Large Cellular Populations and Discovery of Rare Cells Using Single Cell Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry

(2015) Ta-Hsuan Ong et al.   ANALYTICAL CHEMISTRY

Nearly 1000 Protein Identifications from 50 ng of Xenopus laevis Zygote Homogenate Using Online Sample Preparation on a Strong Cation Exchange Monolith Based Microreactor Coupled with Capillary Zone Electrophoresis

(2015) Zhenbin Zhang et al.   ANALYTICAL CHEMISTRY

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets

(2015) Evan Z. Macosko et al.   CELL

The Nuclear Proteome of a Vertebrate

(2015) Martin Wühr et al.   CURRENT BIOLOGY

Molecular asymmetry in the 8-cell stage Xenopus tropicalis embryo described by single blastomere transcript sequencing

(2015) Elena De Domenico et al.   DEVELOPMENTAL BIOLOGY

On the Relationship of Protein and mRNA Dynamics in Vertebrate Embryonic Development

(2015) Leonid Peshkin et al.   DEVELOPMENTAL CELL

Recent advances in enhancing the sensitivity of electrophoresis and electrochromatography in capillaries and microchips (2012-2014)

(2015) Michael C. Breadmore et al.   ELECTROPHORESIS

Xenbase: Core features, data acquisition, and data processing

(2015) Christina James-Zorn et al.   GENESIS

Third-Generation Electrokinetically Pumped Sheath-Flow Nanospray Interface with Improved Stability and Sensitivity for Automated Capillary Zone Electrophoresis–Mass Spectrometry Analysis of Complex Proteome Digests

(2015) Liangliang Sun et al.   JOURNAL OF PROTEOME RESEARCH

The Impact II, a Very High-Resolution Quadrupole Time-of-Flight Instrument (QTOF) for Deep Shotgun Proteomics

(2015) Scarlet Beck et al.   MOLECULAR & CELLULAR PROTEOMICS

Single-cell mass spectrometry reveals small molecules that affect cell fates in the 16-cell embryo

(2015) Rosemary M. Onjiko et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Capillary zone electrophoresis for bottom-up analysis of complex proteomes

(2015) Liangliang Sun et al.   PROTEOMICS

Column–coupling strategies for multidimensional electrophoretic separation techniques

(2014) Pablo A. Kler et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Sheathless Capillary Electrophoresis-Tandem Mass Spectrometry for Top-Down Characterization of Pyrococcus furiosus Proteins on a Proteome Scale

(2014) Xuemei Han et al.   ANALYTICAL CHEMISTRY

Patch Clamp Electrophysiology and Capillary Electrophoresis–Mass Spectrometry Metabolomics for Single Cell Characterization

(2014) Jordan T. Aerts et al.   ANALYTICAL CHEMISTRY

MultiNotch MS3 Enables Accurate, Sensitive, and Multiplexed Detection of Differential Expression across Cancer Cell Line Proteomes

(2014) Graeme C. McAlister et al.   ANALYTICAL CHEMISTRY

The Single-Probe: A Miniaturized Multifunctional Device for Single Cell Mass Spectrometry Analysis

(2014) Ning Pan et al.   ANALYTICAL CHEMISTRY

Over 10 000 Peptide Identifications from the HeLa Proteome by Using Single-Shot Capillary Zone Electrophoresis Combined with Tandem Mass Spectrometry

(2014) Liangliang Sun et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Developments in Interfacing Designs for CE–MS: Towards Enabling Tools for Proteomics and Metabolomics

(2014) Petrus W. Lindenburg et al.   CHROMATOGRAPHIA

Deep Proteomics of the Xenopus laevis Egg using an mRNA-Derived Reference Database

(2014) Martin Wühr et al.   CURRENT BIOLOGY

High-resolution analysis of gene activity during the Xenopus mid-blastula transition

(2014) Clara Collart et al.   DEVELOPMENT

Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ

(2014) Jürgen Cox et al.   MOLECULAR & CELLULAR PROTEOMICS

Highly multiplexed imaging of tumor tissues with subcellular resolution by mass cytometry

(2014) Charlotte Giesen et al.   NATURE METHODS

Xenbase, the Xenopus model organism database; new virtualized system, data types and genomes

(2014) J. Brad Karpinka et al.   NUCLEIC ACIDS RESEARCH

STRING v10: protein–protein interaction networks, integrated over the tree of life

(2014) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

UniProt: a hub for protein information

(2014)   NUCLEIC ACIDS RESEARCH

Quantitative proteomics of Xenopus laevis embryos: expression kinetics of nearly 4000 proteins during early development

(2014) Liangliang Sun et al.   Scientific Reports

Integrated Capillary Zone Electrophoresis–Electrospray Ionization Tandem Mass Spectrometry System with an Immobilized Trypsin Microreactor for Online Digestion and Analysis of Picogram Amounts of RAW 264.7 Cell Lysate

(2013) Liangliang Sun et al.   ANALYTICAL CHEMISTRY

Ultrasensitive and Fast Bottom-up Analysis of Femtogram Amounts of Complex Proteome Digests

(2013) Liangliang Sun et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Protein Analysis by Shotgun/Bottom-up Proteomics

(2013) Yaoyang Zhang et al.   CHEMICAL REVIEWS

Recent applications of on-line sample preconcentration techniques in capillary electrophoresis

(2013) Fumihiko Kitagawa et al.   JOURNAL OF CHROMATOGRAPHY A

The One Hour Yeast Proteome

(2013) Alexander S. Hebert et al.   MOLECULAR & CELLULAR PROTEOMICS

A complete mass-spectrometric map of the yeast proteome applied to quantitative trait analysis

(2013) Paola Picotti et al.   NATURE

Qualitative and quantitative metabolomic investigation of single neurons by capillary electrophoresis electrospray ionization mass spectrometry

(2013) Peter Nemes et al.   Nature Protocols

Single-Cell Metabolomics: Analytical and Biological Perspectives

(2013) R. Zenobi   SCIENCE

Single blastomere expression profiling of Xenopus laevis embryos of 8 to 32-cells reveals developmental asymmetry

(2013) Monika Flachsova et al.   Scientific Reports

Improving the Comprehensiveness and Sensitivity of Sheathless Capillary Electrophoresis–Tandem Mass Spectrometry for Proteomic Analysis

(2012) Yueju Wang et al.   ANALYTICAL CHEMISTRY

Progress toward single cell metabolomics

(2012) Stanislav S Rubakhin et al.   CURRENT OPINION IN BIOTECHNOLOGY

Capillary electrophoresis–electrospray ionization-mass spectrometry interfaces: Fundamental concepts and technical developments

(2012) Grégoire Bonvin et al.   JOURNAL OF CHROMATOGRAPHY A

Probing neuropeptide signaling at the organ and cellular domains via imaging mass spectrometry

(2012) Hui Ye et al.   Journal of Proteomics

Mass spectrometry imaging and profiling of single cells

(2012) Eric J. Lanni et al.   Journal of Proteomics

The Proteomics Identifications (PRIDE) database and associated tools: status in 2013

(2012) Juan Antonio Vizcaíno et al.   NUCLEIC ACIDS RESEARCH

Metabolic Differentiation of Neuronal Phenotypes by Single-cell Capillary Electrophoresis–Electrospray Ionization-Mass Spectrometry

(2011) Peter Nemes et al.   ANALYTICAL CHEMISTRY

Single-cell metabolomics comes of age: new developments in mass spectrometry profiling and imaging

(2011) Aleš Svatoš   ANALYTICAL CHEMISTRY

Andromeda: A Peptide Search Engine Integrated into the MaxQuant Environment

(2011) Jürgen Cox et al.   JOURNAL OF PROTEOME RESEARCH

Protein Conformation and Supercharging with DMSO from Aqueous Solution

(2011) Harry J. Sterling et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

System-wide Perturbation Analysis with Nearly Complete Coverage of the Yeast Proteome by Single-shot Ultra HPLC Runs on a Bench Top Orbitrap

(2011) Nagarjuna Nagaraj et al.   MOLECULAR & CELLULAR PROTEOMICS

Profiling metabolites and peptides in single cells

(2011) Stanislav S Rubakhin et al.   NATURE METHODS

Single-Cell Mass Cytometry of Differential Immune and Drug Responses Across a Human Hematopoietic Continuum

(2011) S. C. Bendall et al.   SCIENCE

Integrated Microfluidic Device for Automated Single Cell Analysis Using Electrophoretic Separation and Electrospray Ionization Mass Spectrometry

(2010) J. Scott Mellors et al.   ANALYTICAL CHEMISTRY

Cellular Heterogeneity: Do Differences Make a Difference?

(2010) Steven J. Altschuler et al.   CELL

Intracellular transactivation of HIV can account for the decelerating decay of virus load during drug therapy

(2010) Christian L Althaus et al.   Molecular Systems Biology

The mechanism and pattern of yolk consumption provide insight into embryonic nutrition in Xenopus

(2009) P. Jorgensen et al.   DEVELOPMENT

New reagents for increasing ESI multiple charging of proteins and protein complexes

(2009) Shirley H. Lomeli et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY