Proteomics Analysis with a Nano Random Forest Approach Reveals Novel Functional Interactions Regulated by SMC Complexes on Mitotic Chromosomes

CTCF Binding Polarity Determines Chromatin Looping

(2015) Elzo de Wit et al.   MOLECULAR CELL

Three-dimensional topology of the SMC2/SMC4 subcomplex from chicken condensin I revealed by cross-linking and molecular modelling

(2015) H. Barysz et al.   Open Biology

MS-Viewer: A Web-based Spectral Viewer for Proteomics Results

(2014) Peter R. Baker et al.   MOLECULAR & CELLULAR PROTEOMICS

Cohesin-dependent globules and heterochromatin shape 3D genome architecture in S. pombe

(2014) Takeshi Mizuguchi et al.   NATURE

ProteomeXchange provides globally coordinated proteomics data submission and dissemination

(2014) Juan A Vizcaíno et al.   NATURE BIOTECHNOLOGY

Association of condensin with chromosomes depends on DNA binding by its HEAT-repeat subunits

(2014) Ilaria Piazza et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Ki-67 is a PP1-interacting protein that organises the mitotic chromosome periphery

(2014) Daniel G Booth et al.   eLife

Cohesin-Dependent Association of Scc2/4 with the Centromere Initiates Pericentromeric Cohesion Establishment

(2013) Josefin Fernius et al.   CURRENT BIOLOGY

Spindle assembly checkpoint proteins are positioned close to core microtubule attachment sites at kinetochores

(2013) Dileep Varma et al.   JOURNAL OF CELL BIOLOGY

Dynamic localization of SMC5/6 complex proteins during mammalian meiosis and mitosis suggests functions in distinct chromosome processes

(2013) R. Gomez et al.   JOURNAL OF CELL SCIENCE

Smc5/6-mediated regulation of replication progression contributes to chromosome assembly during mitosis in human cells

(2013) Lina Marcela Gallego-Paez et al.   MOLECULAR BIOLOGY OF THE CELL

Identification of a Heteromeric Complex That Promotes DNA Replication Origin Firing in Human Cells

(2013) D. Boos et al.   SCIENCE

Rewiring of human lung cell lineage and mitotic networks in lung adenocarcinomas

(2013) Il-Jin Kim et al.   Nature Communications

Condensin I associates with structural and gene regulatory regions in vertebrate chromosomes

(2013) Ji Hun Kim et al.   Nature Communications

Smc5/6-Mms21 Prevents and Eliminates Inappropriate Recombination Intermediates in Meiosis

(2013) Martin Xaver et al.   PLoS Genetics

SUMOylation of the α-Kleisin Subunit of Cohesin Is Required for DNA Damage-Induced Cohesion

(2012) Alexandra McAleenan et al.   CURRENT BIOLOGY

Condensins: universal organizers of chromosomes with diverse functions

(2012) T. Hirano   GENES & DEVELOPMENT

Scc1 sumoylation by Mms21 promotes sister chromatid recombination through counteracting Wapl

(2012) N. Wu et al.   GENES & DEVELOPMENT

Mitotic Regulator SKAP Forms a Link between Kinetochore Core Complex KMN and Dynamic Spindle Microtubules

(2012) Xiwei Wang et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

During Replication Stress, Non-Smc Element 5 (Nse5) Is Required for Smc5/6 Protein Complex Functionality at Stalled Forks

(2012) Denise E. Bustard et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Mitotic chromosomes are compacted laterally by KIF4 and condensin and axially by topoisomerase IIα

(2012) Kumiko Samejima et al.   JOURNAL OF CELL BIOLOGY

Multivariate proteomic profiling identifies novel accessory proteins of coated vesicles

(2012) Georg H.H. Borner et al.   JOURNAL OF CELL BIOLOGY

A promiscuous biotin ligase fusion protein identifies proximal and interacting proteins in mammalian cells

(2012) Kyle J. Roux et al.   JOURNAL OF CELL BIOLOGY

Contrasting roles of condensin I and condensin II in mitotic chromosome formation

(2012) L. C. Green et al.   JOURNAL OF CELL SCIENCE

HDAC8 mutations in Cornelia de Lange syndrome affect the cohesin acetylation cycle

(2012) Matthew A. Deardorff et al.   NATURE

Meiotic DNA joint molecule resolution depends on Nse5-Nse6 of the Smc5-Smc6 holocomplex

(2012) S. Wehrkamp-Richter et al.   NUCLEIC ACIDS RESEARCH

The Proteomics Identifications (PRIDE) database and associated tools: status in 2013

(2012) Juan Antonio Vizcaíno et al.   NUCLEIC ACIDS RESEARCH

Regulation of DNA Replication through Sld3-Dpb11 Interaction Is Conserved from Yeast to Humans

(2011) Dominik Boos et al.   CURRENT BIOLOGY

The Nse2/Mms21 SUMO ligase of the Smc5/6 complex in the maintenance of genome stability

(2011) Anna K. Stephan et al.   FEBS LETTERS

The relative ratio of condensin I to II determines chromosome shapes

(2011) K. Shintomi et al.   GENES & DEVELOPMENT

CENP-E Kinesin Interacts with SKAP Protein to Orchestrate Accurate Chromosome Segregation in Mitosis

(2011) Yuejia Huang et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The astrin–kinastrin/SKAP complex localizes to microtubule plus ends and facilitates chromosome alignment

(2011) Anja K. Dunsch et al.   JOURNAL OF CELL BIOLOGY

Large-scaleDe NovoPrediction of Physical Protein-Protein Association

(2011) Antigoni Elefsinioti et al.   MOLECULAR & CELLULAR PROTEOMICS

Roles of Vertebrate Smc5 in Sister Chromatid Cohesion and Homologous Recombinational Repair

(2011) A. K. Stephan et al.   MOLECULAR AND CELLULAR BIOLOGY

Condensins I and II are essential for construction of bivalent chromosomes in mouse oocytes

(2011) Jibak Lee et al.   MOLECULAR BIOLOGY OF THE CELL

The Smc5–Smc6 Complex Is Required to Remove Chromosome Junctions in Meiosis

(2011) Sarah Farmer et al.   PLoS One

The Protein Composition of Mitotic Chromosomes Determined Using Multiclassifier Combinatorial Proteomics

(2010) Shinya Ohta et al.   CELL

SKAP associates with kinetochores and promotes the metaphase-to-anaphase transition

(2010) Lin Fang et al.   CELL CYCLE

Sister chromatid resolution: a cohesin releasing network and beyond

(2010) Keishi Shintomi et al.   CHROMOSOMA

Building mitotic chromosomes

(2010) Shinya Ohta et al.   CURRENT OPINION IN CELL BIOLOGY

Cohesin organizes chromatin loops at DNA replication factories

(2010) E. Guillou et al.   GENES & DEVELOPMENT

CDK-dependent complex formation between replication proteins Dpb11, Sld2, Pol  , and GINS in budding yeast

(2010) S. Muramatsu et al.   GENES & DEVELOPMENT

Spindly/CCDC99 Is Required for Efficient Chromosome Congression and Mitotic Checkpoint Regulation

(2010) Marin Barisic et al.   MOLECULAR BIOLOGY OF THE CELL

Mediator and cohesin connect gene expression and chromatin architecture

(2010) Michael H. Kagey et al.   NATURE

The Smc5/6 complex is required for dissolution of DNA-mediated sister chromatid linkages

(2010) M. Bermudez-Lopez et al.   NUCLEIC ACIDS RESEARCH

Systematic Analysis of Human Protein Complexes Identifies Chromosome Segregation Proteins

(2010) J. R. A. Hutchins et al.   SCIENCE

Mitotic control of kinetochore-associated dynein and spindle orientation by human Spindly

(2009) Ying Wai Chan et al.   JOURNAL OF CELL BIOLOGY

Cohesins Functionally Associate with CTCF on Mammalian Chromosome Arms

(2008) Vania Parelho et al.   CELL

The cohesin complex and its roles in chromosome biology

(2008) J.-M. Peters et al.   GENES & DEVELOPMENT

Molecular and Genetic Analysis of Condensin Function in Vertebrate Cells

(2008) Damien F. Hudson et al.   MOLECULAR BIOLOGY OF THE CELL

Cohesin mediates transcriptional insulation by CCCTC-binding factor

(2008) Kerstin S. Wendt et al.   NATURE

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY