Quantitative GTPase Affinity Purification Identifies Rho Family Protein Interaction Partners

The Perseus computational platform for comprehensive analysis of (prote)omics data

(2016) Stefka Tyanova et al.   NATURE METHODS

A Human Interactome in Three Quantitative Dimensions Organized by Stoichiometries and Abundances

(2015) Marco Y. Hein et al.   CELL

Quantitative affinity purification mass spectrometry: a versatile technology to study protein–protein interactions

(2015) Katrina Meyer et al.   Frontiers in Genetics

Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ

(2014) Jürgen Cox et al.   MOLECULAR & CELLULAR PROTEOMICS

Activated RhoA Is a Positive Feedback Regulator of the Lbc Family of Rho Guanine Nucleotide Exchange Factor Proteins

(2013) Frank Medina et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

RhoA, RhoB and RhoC have different roles in cancer cell migration

(2013) A.J. RIDLEY   JOURNAL OF MICROSCOPY

The SH2 Domain Interaction Landscape

(2013) Michele Tinti et al.   Cell Reports

New insight into the molecular switch mechanism of human Rho family proteins: shifting a paradigm

(2012) Mamta Jaiswal et al.   BIOLOGICAL CHEMISTRY

Optimized Fast and Sensitive Acquisition Methods for Shotgun Proteomics on a Quadrupole Orbitrap Mass Spectrometer

(2012) Christian D. Kelstrup et al.   JOURNAL OF PROTEOME RESEARCH

Mass spectrometry approaches to monitor protein–drug interactions

(2012) Nico Zinn et al.   METHODS

The inositol 5-phosphatase SHIP2 is an effector of RhoA and is involved in cell polarity and migration

(2012) Katsuhiro Kato et al.   MOLECULAR BIOLOGY OF THE CELL

HIPPIE: Integrating Protein Interaction Networks with Experiment Based Quality Scores

(2012) Martin H. Schaefer et al.   PLoS One

Analyzing protein–protein interactions by quantitative mass spectrometry

(2011) Florian E. Paul et al.   METHODS

Quantitative Interaction Proteomics and Genome-wide Profiling of Epigenetic Histone Marks and Their Readers

(2010) Michiel Vermeulen et al.   CELL

Recent advances in charting protein–protein interaction: mass spectrometry-based approaches

(2010) Anne-Claude Gavin et al.   CURRENT OPINION IN BIOTECHNOLOGY

Quantitative proteomics combined with BAC TransgeneOmics reveals in vivo protein interactions

(2010) Nina C. Hubner et al.   JOURNAL OF CELL BIOLOGY

Towards a knowledge-based Human Protein Atlas

(2010) Mathias Uhlen et al.   NATURE BIOTECHNOLOGY

Host Cell Interactome of Tyrosine-Phosphorylated Bacterial Proteins

(2009) Matthias Selbach et al.   Cell Host & Microbe

Real-time NMR Study of Three Small GTPases Reveals That Fluorescent 2′(3′)-O-(N-Methylanthraniloyl)-tagged Nucleotides Alter Hydrolysis and Exchange Kinetics

(2009) Mohammad T. Mazhab-Jafari et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

A practical guide to the MaxQuant computational platform for SILAC-based quantitative proteomics

(2009) Jürgen Cox et al.   Nature Protocols

High confidence determination of specific protein–protein interactions using quantitative mass spectrometry

(2008) Michiel Vermeulen et al.   CURRENT OPINION IN BIOTECHNOLOGY

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY