Divalent ions as mediators of carbonylation in cardiac myosin binding protein C

Search and sequence analysis tools services from EMBL-EBI in 2022

(2022) Fábio Madeira et al.   NUCLEIC ACIDS RESEARCH

iCarPS: a computational tool for identifying protein carbonylation sites by novel encoded features

(2020) Dan Zhang et al.   BIOINFORMATICS

A protocol for preparing explicitly solvated systems for stable molecular dynamics simulations

(2020) Daniel R. Roe et al.   JOURNAL OF CHEMICAL PHYSICS

Protein structure, amino acid composition and sequence determine proteome vulnerability to oxidation‐induced damage

(2020) Roger L Chang et al.   EMBO JOURNAL

Site-specific phosphorylation of myosin binding protein-C coordinates thin and thick filament activation in cardiac muscle

(2019) Saraswathi Ponnam et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

ff19SB: Amino-Acid-Specific Protein Backbone Parameters Trained against Quantum Mechanics Energy Surfaces in Solution

(2019) Chuan Tian et al.   Journal of Chemical Theory and Computation

N-Terminal Domains of Cardiac Myosin Binding Protein C Cooperatively Activate the Thin Filament

(2018) Cristina Risi et al.   STRUCTURE

A Highly Conserved Yet Flexible Linker Is Part of a Polymorphic Protein-Binding Domain in Myosin-Binding Protein C

(2016) Katharine A. Michie et al.   STRUCTURE

Cardiac myosin-binding protein C (MYBPC3) in cardiac pathophysiology

(2015) Lucie Carrier et al.   GENE

Long-Time-Step Molecular Dynamics through Hydrogen Mass Repartitioning

(2015) Chad W. Hopkins et al.   Journal of Chemical Theory and Computation

Structural Characterization of the C3 Domain of Cardiac Myosin Binding Protein C and Its Hypertrophic Cardiomyopathy-Related R502W Mutant

(2014) Xiaolu Linda Zhang et al.   BIOCHEMISTRY

Deciphering key features in protein structures with the new ENDscript server

(2014) Xavier Robert et al.   NUCLEIC ACIDS RESEARCH

CarSPred: A Computational Tool for Predicting Carbonylation Sites of Human Proteins

(2014) Hongqiang Lv et al.   PLoS One

Doxorubicin-induced carbonylation and degradation of cardiac myosin binding protein C promote cardiotoxicity

(2014) Baikuntha Aryal et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PTRAJ and CPPTRAJ: Software for Processing and Analysis of Molecular Dynamics Trajectory Data

(2013) Daniel R. Roe et al.   Journal of Chemical Theory and Computation

Routine Microsecond Molecular Dynamics Simulations with AMBER on GPUs. 2. Explicit Solvent Particle Mesh Ewald

(2013) Romelia Salomon-Ferrer et al.   Journal of Chemical Theory and Computation

Rational Design of Particle Mesh Ewald Compatible Lennard-Jones Parameters for +2 Metal Cations in Explicit Solvent

(2013) Pengfei Li et al.   Journal of Chemical Theory and Computation

The C0C1 Fragment of Human Cardiac Myosin Binding Protein C Has Common Binding Determinants for Both Actin and Myosin

(2011) Yanling Lu et al.   JOURNAL OF MOLECULAR BIOLOGY

cMyBP-C as a promiscuous substrate: phosphorylation by non-PKA kinases and its potential significance

(2011) Sonya C. Bardswell et al.   JOURNAL OF MUSCLE RESEARCH AND CELL MOTILITY

Protein Carbonylation

(2009) Yuichiro J. Suzuki et al.   ANTIOXIDANTS & REDOX SIGNALING

Bad Seeds Sprout Perilous Dynamics: Stochastic Thermostat Induced Trajectory Synchronization in Biomolecules

(2009) Daniel J. Sindhikara et al.   Journal of Chemical Theory and Computation

Rules Governing Selective Protein Carbonylation

(2009) Etienne Maisonneuve et al.   PLoS One

An investigation into the protonation states of the C1 domain of cardiac myosin-binding protein C

(2008) S. J. Fisher et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Myosin Binding Protein C Positioned to Play a Key Role in Regulation of Muscle Contraction: Structure and Interactions of Domain C1

(2008) Abdessamad Ababou et al.   JOURNAL OF MOLECULAR BIOLOGY

Crystal Structure of the C1 domain of Cardiac Myosin Binding Protein-C: Implications for Hypertrophic Cardiomyopathy

(2008) Lata Govada et al.   JOURNAL OF MOLECULAR BIOLOGY