Genomic insights into isolation of the threatened Florida crested caracara (Caracara plancus)

Sixty-second Supplement to the American Ornithological Society’s Check-list of North American Birds

(2021) R Terry Chesser et al.   AUK

Population-specific signatures of intra-individual mitochondrial DNA heteroplasmy and their potential evolutionary advantages

(2020) Yaron Tikochinski et al.   Scientific Reports

Comparing the Performance of Microsatellites and RADseq in Population Genetic Studies: Analysis of Data for Pike (Esox lucius) and a Synthesis of Previous Studies

(2020) Johanna Sunde et al.   Frontiers in Genetics

An empirical comparison of population genetic analyses using microsatellite and SNP data for a species of conservation concern

(2020) Shawna J. Zimmerman et al.   BMC GENOMICS

Genetic Variation among Island and Continental Populations of Burrowing Owl (Athene cunicularia) Subspecies in North America

(2019) Alberto Macías-Duarte et al.   JOURNAL OF RAPTOR RESEARCH

Elevated Heterozygosity in Adults Relative to Juveniles Provides Evidence of Viability Selection on Eagles and Falcons

(2019) Jacqueline M Doyle et al.   JOURNAL OF HEREDITY

Stacks 2: analytical methods for paired‐end sequencing improve RADseq‐based population genomics

(2019) Nicolas C. Rochette et al.   MOLECULAR ECOLOGY

Urbanization impacts apex predator gene flow but not genetic diversity across an urban‐rural divide

(2019) Daryl R. Trumbo et al.   MOLECULAR ECOLOGY

Ancient DNA from a 2,500-year-old Caribbean fossil places an extinct bird (Caracara creightoni) in a phylogenetic context

(2019) Jessica A. Oswald et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

(2018) Andrew Rambaut et al.   SYSTEMATIC BIOLOGY

Evolution of Communal Roosting: A Social Refuge–Territory Prospecting Hypothesis

(2018) James F. Dwyer et al.   JOURNAL OF RAPTOR RESEARCH

A habitat model to aid the conservation of crested caracaras

(2017) Jennifer A. Smith et al.   JOURNAL OF WILDLIFE MANAGEMENT

DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets

(2017) Julio Rozas et al.   MOLECULAR BIOLOGY AND EVOLUTION

Deriving genotypes from RAD-seq short-read data using Stacks

(2017) Nicolas C Rochette et al.   Nature Protocols

New Evidences of Mitochondrial DNA Heteroplasmy by Putative Paternal Leakage between the Rock Partridge (Alectoris graeca) and the Chukar Partridge (Alectoris chukar)

(2017) Andrea Gandolfi et al.   PLoS One

Improved confidence intervals for the linkage disequilibrium method for estimating effective population size

(2016) A T Jones et al.   HEREDITY

Estimating contemporary effective population size in non-model species using linkage disequilibrium across thousands of loci

(2016) R K Waples et al.   HEREDITY

pophelper: an R package and web app to analyse and visualize population structure

(2016) R. M. Francis   Molecular Ecology Resources

Development and characterization of polymorphic microsatellite markers for the crested caracara, Caracara cheriway

(2015) Erin E. Vaughn et al.   Conservation Genetics Resources

popart: full-feature software for haplotype network construction

(2015) Jessica W. Leigh et al.   Methods in Ecology and Evolution

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Genetics in conservation management: Revised recommendations for the 50/500 rules, Red List criteria and population viability analyses

(2014) Richard Frankham et al.   BIOLOGICAL CONSERVATION

Restriction site-associated DNA sequencing, genotyping error estimation andde novoassembly optimization for population genetic inference

(2014) A. Mastretta-Yanes et al.   Molecular Ecology Resources

related: an R package for analysing pairwise relatedness from codominant molecular markers

(2014) Jack Pew et al.   Molecular Ecology Resources

Range sizes and habitat use of non-breeding Crested Caracaras in Florida

(2013) James F. Dwyer et al.   JOURNAL OF FIELD ORNITHOLOGY

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

NeEstimatorv2: re-implementation of software for the estimation of contemporary effective population size (Ne) from genetic data

(2013) C. Do et al.   Molecular Ecology Resources

Molecular systematics of the caracaras and allies (Falconidae: Polyborinae) inferred from mitochondrial and nuclear sequence data

(2012) JÉRÔME FUCHS et al.   IBIS

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

(2012) Brant K. Peterson et al.   PLoS One

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

PGDSpider: an automated data conversion tool for connecting population genetics and genomics programs

(2011) H. E. L. Lischer et al.   BIOINFORMATICS

Stacks : Building and Genotyping Loci De Novo From Short-Read Sequences

(2011) Julian M. Catchen et al.   G3-Genes Genomes Genetics

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

Genetic Restoration of the Florida Panther

(2010) W. E. Johnson et al.   SCIENCE

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

Tropical and western influences in vertebrate faunas from the Pliocene and Pleistocene of Florida

(2009) Gary S. Morgan et al.   QUATERNARY INTERNATIONAL

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

Genetic divergence among Snail Kite subspecies: implications for the conservation of the endangered Florida Snail KiteRostrhamus sociabilis

(2008) S. E. HAAS et al.   IBIS