Ancestry testing of “Old Tom,” a killer whale central to mutualistic interactions with human whalers

Suction causes novel tooth wear in marine mammals, with implications for feeding evolution in baleen whales

(2023) Felix G. Marx et al.   JOURNAL OF MAMMALIAN EVOLUTION

Inbreeding depression explains killer whale population dynamics

(2023) Marty Kardos et al.   Nature Ecology & Evolution

The first three records of killer whales ( Orcinus orca ) killing and eating blue whales ( Balaenoptera musculus )

(2022) John A. Totterdell et al.   MARINE MAMMAL SCIENCE

Reciprocal Contributions between People and Nature: A Conceptual Intervention

(2022) Jaime Ojeda et al.   BIOSCIENCE

Safeguarding human–wildlife cooperation

(2022) Jessica E. M. van der Wal et al.   Conservation Letters

Ancient and modern stickleback genomes reveal the demographic constraints on adaptation

(2021) Melanie Kirch et al.   CURRENT BIOLOGY

Population genomic structure of killer whales ( Orcinus orca ) in Australian and New Zealand waters

(2021) Isabella M. Reeves et al.   MARINE MAMMAL SCIENCE

Runs of homozygosity in killer whale genomes provide a global record of demographic histories

(2021) Andrew D. Foote et al.   MOLECULAR ECOLOGY

Robust genome-wide ancestry inference for heterogeneous datasets: illustrated using the 1,000 genome project with 3D facial images

(2020) Jiarui Li et al.   Scientific Reports

Killer whale genomes reveal a complex history of recurrent admixture and vicariance

(2019) Andrew D. Foote et al.   MOLECULAR ECOLOGY

The presence and impact of reference bias on population genomic studies of prehistoric human populations

(2019) Torsten Günther et al.   PLoS Genetics

Extraction of highly degraded DNA from ancient bones, teeth and sediments for high-throughput sequencing

(2018) Nadin Rohland et al.   Nature Protocols

Incorporate Indigenous perspectives for impactful research and effective management

(2018) Natalie C. Ban et al.   Nature Ecology & Evolution

A genomic history of Aboriginal Australia

(2016) Anna-Sapfo Malaspinas et al.   NATURE

Maternal kinship and fisheries interaction influence killer whale social structure

(2015) R. Esteban et al.   BEHAVIORAL ECOLOGY AND SOCIOBIOLOGY

Geographic and temporal dynamics of a global radiation and diversification in the killer whale

(2015) Phillip A. Morin et al.   MOLECULAR ECOLOGY

A global reference for human genetic variation

(2015) Richard A. Gibbs et al.   NATURE

Improving access to endogenous DNA in ancient bones and teeth

(2015) Peter B. Damgaard et al.   Scientific Reports

ANGSD: Analysis of Next Generation Sequencing Data

(2014) Thorfinn Sand Korneliussen et al.   BMC BIOINFORMATICS

First Ancient Mitochondrial Human Genome from a Prepastoralist Southern African

(2014) Alan G. Morris et al.   Genome Biology and Evolution

Separating endogenous ancient DNA from modern day contamination in a Siberian Neandertal

(2014) Pontus Skoglund et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mitogenomic insights into a recently described and rarely observed killer whale morphotype

(2013) Andrew D. Foote et al.   POLAR BIOLOGY

Inference of human population history from individual whole-genome sequences

(2011) Heng Li et al.   NATURE

Demographic history and rare allele sharing among human populations

(2011) S. Gravel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An Aboriginal Australian Genome Reveals Separate Human Dispersals into Asia

(2011) M. Rasmussen et al.   SCIENCE

Complete mitochondrial genome phylogeographic analysis of killer whales (Orcinus orca) indicates multiple species

(2010) P. A. Morin et al.   GENOME RESEARCH

Ancient human genome sequence of an extinct Palaeo-Eskimo

(2010) Morten Rasmussen et al.   NATURE

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Ecological, morphological and genetic divergence of sympatric North Atlantic killer whale populations

(2009) ANDREW D. FOOTE et al.   MOLECULAR ECOLOGY