Structural framework for the understanding spectroscopic and functional signatures of the cyanobacterial Orange Carotenoid Protein families

Stages of OCP-FRP Interactions in the Regulation of Photoprotection in Cyanobacteria, Part 1: Time-Resolved Spectroscopy

(2023) Georgy V. Tsoraev et al.   Journal of Physical Chemistry B

Fortuitously compatible protein surfaces primed allosteric control in cyanobacterial photoprotection

(2023) Niklas Steube et al.   Nature Ecology & Evolution

A synthetic switch based on orange carotenoid protein to control blue–green light responses in chloroplasts

(2022) Luca Piccinini et al.   PLANT PHYSIOLOGY

Structure-function-dynamics relationships in the peculiar Planktothrix PCC7805 OCP1: Impact of his-tagging and carotenoid type

(2022) Adjélé Wilson et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Structures of a phycobilisome in light-harvesting and photoprotected states

(2022) María Agustina Domínguez-Martín et al.   NATURE

A primordial Orange Carotenoid Protein: Structure, photoswitching activity and evolutionary aspects

(2022) Yury B. Slonimskiy et al.   INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

Heterologous expression of cyanobacterial Orange Carotenoid Protein (OCP2) as a soluble carrier of ketocarotenoids in Chlamydomonas reinhardtii

(2021) Matteo Pivato et al.   Algal Research-Biomass Biofuels and Bioproducts

Role of hydrogen bond alternation and charge transfer states in photoactivation of the Orange Carotenoid Protein

(2021) Igor A. Yaroshevich et al.   Communications Biology

Highly accurate protein structure prediction with AlphaFold

(2021) John Jumper et al.   NATURE

Microalgal protein AstaP is a potent carotenoid solubilizer and delivery module with a broad carotenoid binding repertoire

(2021) Yury B. Slonimskiy et al.   FEBS Journal

Engineering the photoactive orange carotenoid protein with redox-controllable structural dynamics and photoprotective function

(2020) Yury B. Slonimskiy et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Structural dynamics in the C terminal domain homolog of orange carotenoid Protein reveals residues critical for carotenoid uptake

(2020) Dvir Harris et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Scalable molecular dynamics on CPU and GPU architectures with NAMD

(2020) James C. Phillips et al.   JOURNAL OF CHEMICAL PHYSICS

TeraChem : A graphical processing unit ‐accelerated electronic structure package for large‐scale ab initio molecular dynamics

(2020) Stefan Seritan et al.   Wiley Interdisciplinary Reviews-Computational Molecular Science

Spectral Signatures of Canthaxanthin Translocation in the Orange Carotenoid Protein

(2020) Natalia B. Pigni et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Orange and red carotenoid proteins are involved in the adaptation of the terrestrial cyanobacterium Nostoc flagelliforme to desiccation

(2019) Yi-Wen Yang et al.   PHOTOSYNTHESIS RESEARCH

Light‐controlled carotenoid transfer between water‐soluble proteins related to cyanobacterial photoprotection

(2019) Yury B. Slonimskiy et al.   FEBS Journal

A genetically encoded fluorescent temperature sensor derived from the photoactive Orange Carotenoid Protein

(2019) Eugene G. Maksimov et al.   Scientific Reports

Comparative ultrafast spectroscopy and structural analysis of OCP1 and OCP2 from Tolypothrix

(2019) Valentyna Kuznetsova et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Changing Color for Photoprotection: The Orange Carotenoid Protein

(2019) Fernando Muzzopappa et al.   TRENDS IN PLANT SCIENCE

Regulating photoprotection improves photosynthetic growth and biomass production in QC-site mutant cells of the cyanobacterium Synechocystis sp. PCC 6803

(2018) J.-Y. Huang et al.   PHOTOSYNTHETICA

Catalytic mechanism and molecular engineering of quinolone biosynthesis in dioxygenase AsqJ

(2018) Sophie L. Mader et al.   Nature Communications

OCP–FRP protein complex topologies suggest a mechanism for controlling high light tolerance in cyanobacteria

(2018) Nikolai N. Sluchanko et al.   Nature Communications

Photoactivation Mechanism, Timing of Protein Secondary Structure Dynamics and Carotenoid Translocation in the Orange Carotenoid Protein

(2018) Patrick E. Konold et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Role of the PB-loop in ApcE and phycobilisome core function in cyanobacterium Synechocystis sp. PCC 6803

(2018) Dmitry V. Zlenko et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Deletion of the short N-terminal extension in OCP reveals the main site for FRP binding

(2017) Nikolai N. Sluchanko et al.   FEBS LETTERS

Orange Carotenoid Protein as a Control Element in an Antenna System Based on a DNA Nanostructure

(2017) Alessio Andreoni et al.   NANO LETTERS

Assembly of photoactive orange carotenoid protein from its domains unravels a carotenoid shuttle mechanism

(2017) Marcus Moldenhauer et al.   PHOTOSYNTHESIS RESEARCH

Interaction of the signaling state analog and the apoprotein form of the orange carotenoid protein with the fluorescence recovery protein

(2017) Marcus Moldenhauer et al.   PHOTOSYNTHESIS RESEARCH

Photoactivation mechanism of a carotenoid-based photoreceptor

(2017) Sepalika Bandara et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The photocycle of orange carotenoid protein conceals distinct intermediates and asynchronous changes in the carotenoid and protein components

(2017) E. G. Maksimov et al.   Scientific Reports

Polder maps: improving OMIT maps by excluding bulk solvent

(2017) Dorothee Liebschner et al.   Acta Crystallographica Section D-Structural Biology

Dramatic Domain Rearrangements of the Cyanobacterial Orange Carotenoid Protein upon Photoactivation

(2016) Haijun Liu et al.   BIOCHEMISTRY

S···O and S···N Sulfur Bonding Interactions in Protein–Ligand Complexes: Empirical Considerations and Scoring Function

(2016) Mathew R. Koebel et al.   Journal of Chemical Information and Modeling

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

A comparative study of three signaling forms of the orange carotenoid protein

(2016) E. G. Maksimov et al.   PHOTOSYNTHESIS RESEARCH

Different Functions of the Paralogs to the N-Terminal Domain of the Orange Carotenoid Protein in the Cyanobacterium Anabaena sp. PCC 7120

(2016) Rocío López-Igual et al.   PLANT PHYSIOLOGY

Improving photosynthesis and crop productivity by accelerating recovery from photoprotection

(2016) Johannes Kromdijk et al.   SCIENCE

The Signaling State of Orange Carotenoid Protein

(2015) Eugene G. Maksimov et al.   BIOPHYSICAL JOURNAL

Regulation of Orange Carotenoid Protein Activity in Cyanobacterial Photoprotection

(2015) Adrien Thurotte et al.   PLANT PHYSIOLOGY

Local and global structural drivers for the photoactivation of the orange carotenoid protein

(2015) Sayan Gupta et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A 12 A carotenoid translocation in a photoswitch associated with cyanobacterial photoprotection

(2015) R. L. Leverenz et al.   SCIENCE

Biosynthesis of soluble carotenoid holoproteins in Escherichia coli

(2015) Céline Bourcier de Carbon et al.   Scientific Reports

Chemical activation of the cyanobacterial orange carotenoid protein

(2014) Jeremy D. King et al.   FEBS LETTERS

Structural and Functional Modularity of the Orange Carotenoid Protein: Distinct Roles for the N- and C-Terminal Domains in Cyanobacterial Photoprotection

(2014) R. L. Leverenz et al.   PLANT CELL

How good are my data and what is the resolution?

(2013) Philip R. Evans et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing

(2013) P. M. Shih et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Crystal structure of the FRP and identification of the active site for modulation of OCP-mediated photoprotection in cyanobacteria

(2013) M. Sutter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Optimization of the Additive CHARMM All-Atom Protein Force Field Targeting Improved Sampling of the Backbone ϕ, ψ and Side-Chain χ1 and χ2 Dihedral Angles

(2012) Robert B. Best et al.   Journal of Chemical Theory and Computation

Structural Basis for the Slow Dark Recovery of a Full-Length LOV Protein from Pseudomonas putida

(2012) Franco Circolone et al.   JOURNAL OF MOLECULAR BIOLOGY

The Essential Role of the N-Terminal Domain of the Orange Carotenoid Protein in Cyanobacterial Photoprotection: Importance of a Positive Charge for Phycobilisome Binding

(2012) A. Wilson et al.   PLANT CELL

REFMAC5 for the refinement of macromolecular crystal structures

(2011) Garib N. Murshudov et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Discovery of the first non-ATP competitive IGF-1R kinase inhibitors: Advantages in comparison with competitive inhibitors

(2011) Dominique Lesuisse et al.   BIOORGANIC & MEDICINAL CHEMISTRY LETTERS

Impact of 2′-hydroxyl sampling on the conformational properties of RNA: Update of the CHARMM all-atom additive force field for RNA

(2011) Elizabeth J. Denning et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Multiwfn: A multifunctional wavefunction analyzer

(2011) Tian Lu et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Unexpected Binding Orientation of Bulky-B-Ring Anti-Androgens and Implications for Future Drug Targets

(2011) Charles B. Duke et al.   JOURNAL OF MEDICINAL CHEMISTRY

T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension

(2011) P. Di Tommaso et al.   NUCLEIC ACIDS RESEARCH

In Vitro Reconstitution of the Cyanobacterial Photoprotective Mechanism Mediated by the Orange Carotenoid Protein in Synechocystis PCC 6803

(2011) M. Gwizdala et al.   PLANT CELL

The ORCA program system

(2011) Frank Neese   Wiley Interdisciplinary Reviews-Computational Molecular Science

XDS

(2010) Wolfgang Kabsch   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Structural Determinants Underlying Photoprotection in the Photoactive Orange Carotenoid Protein of Cyanobacteria

(2010) Adjele Wilson et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

A consistent and accurate ab initio parametrization of density functional dispersion correction (DFT-D) for the 94 elements H-Pu

(2010) Stefan Grimme et al.   JOURNAL OF CHEMICAL PHYSICS

Identification of a protein required for recovery of full antenna capacity in OCP-related photoprotective mechanism in cyanobacteria

(2010) C. Boulay et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Influence of zeaxanthin and echinenone binding on the activity of the Orange Carotenoid Protein

(2009) Claire Punginelli et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Identification and SAR of squarate inhibitors of mitogen activated protein kinase-activated protein kinase 2 (MK-2)

(2009) Frank Lovering et al.   BIOORGANIC & MEDICINAL CHEMISTRY

NFκB selectivity of estrogen receptor ligands revealed by comparative crystallographic analyses

(2008) Kendall W Nettles et al.   Nature Chemical Biology

A photoactive carotenoid protein acting as light intensity sensor

(2008) A. Wilson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Crystallographic structure of xanthorhodopsin, the light-driven proton pump with a dual chromophore

(2008) H. Luecke et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA