Transcriptomic analysis reveals how a lack of potassium ions increases Sulfolobus acidocaldarius sensitivity to pH changes

Ancient systems of sodium/potassium homeostasis as predecessors of membrane bioenergetics

(2015) D. V. Dibrova et al.   BIOCHEMISTRY-MOSCOW

Inferring gene function from evolutionary change in signatures of translation efficiency

(2014) Anita Krisko et al.   GENOME BIOLOGY

Bacterial Mechanosensitive Channels: Models for Studying Mechanosensory Transduction

(2013) Boris Martinac et al.   ANTIOXIDANTS & REDOX SIGNALING

BNFinder2: Faster Bayesian network learning and Bayesian classification

(2013) Norbert Dojer et al.   BIOINFORMATICS

Response of Acidithiobacillus caldus toward suboptimal pH conditions

(2013) Stefanie Mangold et al.   EXTREMOPHILES

Lrs14 transcriptional regulators influence biofilm formation and cell motility of Crenarchaea

(2013) Alvaro Orell et al.   ISME Journal

Archaeal Signal Transduction: Impact of Protein Phosphatase Deletions on Cell Size, Motility, and Energy Metabolism inSulfolobus acidocaldarius

(2013) Julia Reimann et al.   MOLECULAR & CELLULAR PROTEOMICS

Detecting differential usage of exons from RNA-seq data

(2012) S. Anders et al.   GENOME RESEARCH

STRING v9.1: protein-protein interaction networks, with increased coverage and integration

(2012) Andrea Franceschini et al.   NUCLEIC ACIDS RESEARCH

Origin of first cells at terrestrial, anoxic geothermal fields

(2012) A. Y. Mulkidjanian et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Versatile Genetic Tool Box for the Crenarchaeote Sulfolobus acidocaldarius

(2012) Michaela Wagner et al.   Frontiers in Microbiology

Crystal structure of a potassium ion transporter, TrkH

(2011) Yu Cao et al.   NATURE

Gene network inference and visualization tools for biologists: application to new human transcriptome datasets

(2011) Daniel Hurley et al.   NUCLEIC ACIDS RESEARCH

Manipulation of FASTQ data with Galaxy

(2010) D. Blankenberg et al.   BIOINFORMATICS

Bacterial metal-sensing proteins exemplified by ArsR–SmtB family repressors

(2010) Deenah Osman et al.   NATURAL PRODUCT REPORTS

Osmolytes Contribute to pH Homeostasis of Escherichia coli

(2010) Ryan D. Kitko et al.   PLoS One

The S-Layer Glycoprotein of the CrenarchaeoteSulfolobus acidocaldariusIs Glycosylated at Multiple Sites with Chitobiose-LinkedN-Glycans

(2010) Elham Peyfoon et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

(2010) Jeremy Goecks et al.   GENOME BIOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Effect of O2concentrations onSulfolobus solfataricus P2

(2009) Gwénola Simon et al.   FEMS MICROBIOLOGY LETTERS

Potassium Transport in Corynebacterium glutamicum Is Facilitated by the Putative Channel Protein CglK, Which Is Essential for pH Homeostasis and Growth at Acidic pH

(2009) M. Follmann et al.   JOURNAL OF BACTERIOLOGY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Genetic tools for Sulfolobus spp.: vectors and first applications

(2008) Silvia Berkner et al.   ARCHIVES OF MICROBIOLOGY

Energetic problems faced by micro-organisms growing or surviving on parsimonious energy sources and at acidic pH: I. Acidithiobacillus ferrooxidans as a paradigm

(2008) Stuart J. Ferguson et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS