4.7 Article

Informatic deconvolution of biased GPCR signaling mechanisms from in vivo pharmacological experimentation

Journal

METHODS
Volume 92, Issue -, Pages 51-63

Publisher

ACADEMIC PRESS INC ELSEVIER SCIENCE
DOI: 10.1016/j.ymeth.2015.05.013

Keywords

G protein-coupled receptor; Signaling bias; Arrestin; Informatic; Transcriptome; In vivo

Funding

  1. National Institutes of Health [AG000916-01]
  2. National Institutes of Health National Institute of General Medical Sciences [R01-GM095497]
  3. National Institutes of Health National Institute of Diabetes, Digestive and Kidney Diseases [R01-DK055524]
  4. National Institutes of Health National Institute of Child Health and Human Development [T32-HD043446]
  5. EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT [K12HD043446] Funding Source: NIH RePORTER
  6. NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES [R01DK055524] Funding Source: NIH RePORTER
  7. NATIONAL INSTITUTE OF GENERAL MEDICAL SCIENCES [R01GM095497] Funding Source: NIH RePORTER
  8. NATIONAL INSTITUTE ON AGING [Z01AG000318, ZIAAG000916] Funding Source: NIH RePORTER

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Ligands possessing different physico-chemical structures productively interact with G protein-coupled receptors generating distinct downstream signaling events due to their abilities to activate/select idiosyncratic receptor entities ('receptorsomes') from the full spectrum of potential receptor partners. We have employed multiple novel informatic approaches to identify and characterize the in vivo transcriptomic signature of an arrestin-signaling biased ligand, [D-Trp(12),Tyr(34)]-bPTH(7-34), acting at the parathyroid hormone type I receptor (PTH1R), across six different murine tissues after chronic drug exposure. We are able to demonstrate that [D-Trp(12),Tyr(34)]-bPTH(7-34) elicits a distinctive arrestin-signaling focused transcriptomic response that is more coherently regulated, in an arrestin signaling-dependent manner, across more tissues than that of the pluripotent endogenous PTIIIR ligand, hPTH(1-34). This arrestin-focused response signature is strongly linked with the transcriptional regulation of cell growth and development. Our informatic deconvolution of a conserved arrestin-dependent transcriptomic signature from wild type mice demonstrates a conceptual framework within which the in vivo outcomes of biased receptor signaling may be further investigated or predicted. Published by Elsevier Inc.

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