Cold adapted and closely related mucoraceae species colonise dry-aged beef (DAB)

ITS alchemy: On the use of ITS as a DNA marker in fungal ecology

(2023) Håvard Kauserud   Fungal Ecology

Volatile Profile of Dry and Wet Aged Beef Loin and Its Relationship with Consumer Flavour Liking

(2021) Zhenzhao Li et al.   Foods

Comparison of the performance of ITS1 and ITS2 as barcodes in amplicon-based sequencing of bioaerosols

(2020) Hamza Mbareche et al.   PeerJ

Dry-aged beef manufactured in Japan: Microbiota identification and their effects on product characteristics

(2020) Nana Mikami et al.   FOOD RESEARCH INTERNATIONAL

Changes in microbial composition on the crust by different air flow velocities and their effect on sensory properties of dry-aged beef

(2019) Hyun Jung Lee et al.   MEAT SCIENCE

RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference

(2019) Alexey M Kozlov et al.   BIOINFORMATICS

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Identification of Microorganisms Associated with the Quality Improvement of Dry‐Aged Beef Through Microbiome Analysis and DNA Sequencing, and Evaluation of Their Effects on Beef Quality

(2019) Hyemin Oh et al.   JOURNAL OF FOOD SCIENCE

A new species concept for the clinically relevant Mucor circinelloides complex

(2019) L. Wagner et al.   PERSOONIA

The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications

(2018) Rolf Henrik Nilsson et al.   NUCLEIC ACIDS RESEARCH

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

PIPITS: an automated pipeline for analyses of fungal internal transcribed spacer sequences from the Illumina sequencing platform

(2015) Hyun S. Gweon et al.   Methods in Ecology and Evolution

Shotgun metagenomes and multiple primer pair-barcode combinations of amplicons reveal biases in metabarcoding analyses of fungi

(2015) Leho Tedersoo et al.   MycoKeys

Yarrowia lipolytica: Safety assessment of an oleaginous yeast with a great industrial potential

(2013) Marizeth Groenewald et al.   CRITICAL REVIEWS IN MICROBIOLOGY

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

DNA barcoding in Mucorales: an inventory of biodiversity

(2013) G. Walther et al.   PERSOONIA

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Unipro UGENE: a unified bioinformatics toolkit

(2012) Konstantin Okonechnikov et al.   BIOINFORMATICS

Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi

(2012) C. L. Schoch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS