XAI-MethylMarker: Explainable AI approach for biomarker discovery for breast cancer subtype classification using methylation data

Overexpression of SERPINA3 promotes tumor invasion and migration, epithelial-mesenchymal-transition in triple-negative breast cancer cells

(2021) Yingzi Zhang et al.   Breast Cancer

Early cancer detection from genome-wide cell-free DNA fragmentation via shuffled frog leaping algorithm and support vector machine

(2021) Linjing Liu et al.   BIOINFORMATICS

XOmiVAE: an interpretable deep learning model for cancer classification using high-dimensional omics data

(2021) Eloise Withnell et al.   BRIEFINGS IN BIOINFORMATICS

A deep embedded refined clustering approach for breast cancer distinction based on DNA methylation

(2021) Rocío del Amor et al.   NEURAL COMPUTING & APPLICATIONS

High expression of protein phosphatase 2 regulatory subunit B'' alpha predicts poor outcome in hepatocellular carcinoma patients after liver transplantation

(2021) Jia-Jia He et al.   World Journal of Gastrointestinal Oncology

The Roles of Diacylglycerol Kinase α in Cancer Cell Proliferation and Apoptosis

(2021) Fumio Sakane et al.   Cancers

Integrative analysis of DNA methylation and gene expression profiles identified potential breast cancer-specific diagnostic markers

(2020) Xinhua Liu et al.   BIOSCIENCE REPORTS

Genome-Wide Analysis of Methylation-Driven Genes and Identification of an Eight-Gene Panel for Prognosis Prediction in Breast Cancer

(2020) Yanshen Kuang et al.   Frontiers in Genetics

Classifying Breast Cancer Subtypes Using Deep Neural Networks Based on Multi-Omics Data

(2020) Yuqi Lin et al.   Genes

IFI27/ISG12 Downregulates Estrogen Receptor α Transactivation by Facilitating Its Interaction With CRM1/XPO1 in Breast Cancer Cells

(2020) Mayte Guadalupe Cervantes-Badillo et al.   Frontiers in Endocrinology

Classifying Breast Cancer Subtypes Using Multiple Kernel Learning Based on Omics Data

(2019) Mingxin Tao et al.   Genes

Exploring the Molecular Mechanism of the Drug-Treated Breast Cancer Based on Gene Expression Microarray

(2019) Alshabi et al.   Biomolecules

Reviewing ensemble classification methods in breast cancer

(2019) Mohamed Hosni et al.   COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE

Identifying Methylation Pattern and Genes Associated with Breast Cancer Subtypes

(2019) Lei Chen et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Olfactory receptor gene abundance in invasive breast carcinoma

(2019) Shirin Masjedi et al.   Scientific Reports

PROMO: an interactive tool for analyzing clinically-labeled multi-omic cancer datasets

(2019) Dvir Netanely et al.   BMC BIOINFORMATICS

MGRFE: Multilayer Recursive Feature Elimination Based on an Embedded Genetic Algorithm for Cancer Classification

(2019) Cheng Peng et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

A deep learning-based multi-model ensemble method for cancer prediction

(2018) Yawen Xiao et al.   COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE

lncRNA Gene Signatures for Prediction of Breast Cancer Intrinsic Subtypes and Prognosis

(2018) Silu Zhang et al.   Genes

Olfactory Receptors as Biomarkers in Human Breast Carcinoma Tissues

(2018) Lea Weber et al.   Frontiers in Oncology

Discordance of the PAM50 Intrinsic Subtypes Compared with IHC-Based Surrogate in Breast Cancer Patients: Potential Implication of Genomic Alterations of Discordance

(2018) Hee Kyung Kim et al.   Cancer Research and Treatment

GPCR Modulation in Breast Cancer

(2018) Rosamaria Lappano et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Extensive Transcriptomic and Genomic Analysis Provides New Insights about Luminal Breast Cancers

(2016) Inna Tishchenko et al.   PLoS One

Interferon alpha-inducible protein 27 promotes epithelial–mesenchymal transition and induces ovarian tumorigenicity and stemness

(2015) Shuqin Li et al.   JOURNAL OF SURGICAL RESEARCH

Breast cancer classification: linking molecular mechanisms to disease prognosis

(2014) A. Taherian-Fard et al.   BRIEFINGS IN BIOINFORMATICS

A DNA methylation-based definition of biologically distinct breast cancer subtypes

(2014) Olafur A. Stefansson et al.   Molecular Oncology

Kinome-wide screening of HER2+ breast cancer cells for molecules that mediate cell proliferation or sensitize cells to trastuzumab therapy

(2014) V Lapin et al.   Oncogenesis

ChAMP: 450k Chip Analysis Methylation Pipeline

(2013) Tiffany J. Morris et al.   BIOINFORMATICS

Rhomboid family gene expression profiling in breast normal tissue and tumor samples

(2013) R. Canzoneri et al.   TUMOR BIOLOGY

Breast Cancer Classification According to Immunohistochemistry Markers: Subtypes and Association With Clinicopathologic Variables in a Peruvian Hospital Database

(2010) Carlos S. Vallejos et al.   Clinical Breast Cancer

Supervised Risk Predictor of Breast Cancer Based on Intrinsic Subtypes

(2009) Joel S. Parker et al.   JOURNAL OF CLINICAL ONCOLOGY