Analysis of genome-wide 5-hydroxymethylation of blood samples stored in different anticoagulants: opportunities for the expansion of clinical resources for epigenetic research

Genome-wide profiling of 5-hydroxymethylcytosines in circulating cell-free DNA reveals population-specific pathways in the development of multiple myeloma

(2022) Brian C.-H. Chiu et al.   Journal of Hematology & Oncology

Alterations of 5-hydroxymethylation in circulating cell-free DNA reflect molecular distinctions of subtypes of non-Hodgkin lymphoma

(2021) Brian C.-H. Chiu et al.   npj Genomic Medicine

5-Hydroxymethylcytosine signatures in circulating cell-free DNA as diagnostic and predictive biomarkers for coronary artery disease

(2020) Chaoran Dong et al.   Clinical Epigenetics

304-OR: 5-Hydroxymethylcytosines in Circulating Cell-Free DNA Reveal Diabetic Nephropathy

(2020) CHANG ZENG et al.   DIABETES

Alterations of 5-hydroxymethylcytosines in circulating cell-free DNA reflect retinopathy in type 2 diabetes

(2020) Liyuan Han et al.   GENOMICS

5‐Hydroxymethylcytosine profiling from genomic and cell‐free DNA for colorectal cancers patients

(2019) Pingting Gao et al.   JOURNAL OF CELLULAR AND MOLECULAR MEDICINE

Genome-wide mapping of 5-hydroxymethylcytosines in circulating cell-free DNA as a non-invasive approach for early detection of hepatocellular carcinoma

(2019) Jiabin Cai et al.   GUT

5-Hydroxymethylcytosines in Circulating Cell-Free DNA Reveal Vascular Complications of Type 2 Diabetes

(2019) Ying Yang et al.   CLINICAL CHEMISTRY

5-hydroxymethylcytosine profiles in circulating cell-free DNA associate with disease burden in children with neuroblastoma

(2019) Mark A Applebaum et al.   CLINICAL CANCER RESEARCH

A Highly Sensitive and Robust Method for Genome-wide 5hmC Profiling of Rare Cell Populations

(2016) Dali Han et al.   MOLECULAR CELL

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

The Prostate, Lung, Colorectal, and Ovarian Cancer Screening Trial and Its Associated Research Resource

(2013) C. S. Zhu et al.   JNCI-Journal of the National Cancer Institute

GENCODE: The reference human genome annotation for The ENCODE Project

(2012) J. Harrow et al.   GENOME RESEARCH

An integrated encyclopedia of DNA elements in the human genome

(2012)   NATURE

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Uncovering the role of 5-hydroxymethylcytosine in the epigenome

(2011) Miguel R. Branco et al.   NATURE REVIEWS GENETICS

Selective chemical labeling reveals the genome-wide distribution of 5-hydroxymethylcytosine

(2010) Chun-Xiao Song et al.   NATURE BIOTECHNOLOGY