Chromosome-level assembly and annotation of the Xyrichtys novacula (Linnaeus, 1758) genome

The rise of animal biotelemetry and genetics research data integration

(2023) Mara F. Müller et al.   Ecology and Evolution

Big-data approaches lead to an increased understanding of the ecology of animal movement

(2022) Ran Nathan et al.   SCIENCE

YaHS: yet another Hi-C scaffolding tool

(2022) Chenxi Zhou et al.   BIOINFORMATICS

The Role of DNA Methylation Reprogramming during Sex Determination and Transition in Zebrafish

(2021) Xinxin Wang et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Aggressiveness-related behavioural types in the pearly razorfish

(2021) Martina Martorell-Barceló et al.   PeerJ

High-Throughput Tracking of Social Networks in Marine Fish Populations

(2021) Eneko Aspillaga et al.   Frontiers in Marine Science

Identifying and removing haplotypic duplication in primary genome assemblies

(2020) Dengfeng Guan et al.   BIOINFORMATICS

BlobToolKit - Interactive Quality Assessment of Genome Assemblies

(2020) Richard Challis et al.   G3-Genes Genomes Genetics

Complete mitochondrial genome of the pearly razorfish Xyrichtys novacula: phylogenetic analysis of its placement within the Labridae family

(2020) Margarida Barcelo-Serra et al.   Mitochondrial DNA Part B-Resources

GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes

(2020) T. Rhyker Ranallo-Benavidez et al.   Nature Communications

The current application of ecological connectivity in the design of marine protected areas

(2019) Arieanna C. Balbar et al.   Global Ecology and Conservation

Chromosomal polymorphism and molecular variability in the pearly razorfish Xyrichtys novacula (Labriformes, Labridae): taxonomic and biogeographic implications

(2019) Mauro Nirchio et al.   GENETICA

Assembly of long, error-prone reads using repeat graphs

(2019) Mikhail Kolmogorov et al.   NATURE BIOTECHNOLOGY

NextPolish: a fast and efficient genome polishing tool for long-read assembly

(2019) Jiang Hu et al.   BIOINFORMATICS

Minimap2: pairwise alignment for nucleotide sequences

(2018) Heng Li   BIOINFORMATICS

Fitness consequences of fish circadian behavioural variation in exploited marine environments

(2018) Martina Martorell-Barceló et al.   PeerJ

Efficient and accurate detection of splice junctions from RNA-seq with Portcullis

(2018) Daniel Mapleson et al.   GigaScience

Chromosomal Evolution and Cytotaxonomy in Wrasses (Perciformes; Labridae)

(2017) Leandro A. H. Almeida et al.   JOURNAL OF HEREDITY

Repeatability of circadian behavioural variation revealed in free-ranging marine fish

(2017) Josep Alós et al.   Royal Society Open Science

CMsearch: simultaneous exploration of protein sequence space and structure space improves not only protein homology detection but also protein structure prediction

(2016) Xuefeng Cui et al.   BIOINFORMATICS

TACO produces robust multisample transcriptome assemblies from RNA-seq

(2016) Yashar S Niknafs et al.   NATURE METHODS

Bending Genders: The Biology of Natural Sex Change in Fish

(2016) Erica V. Todd et al.   Sexual Development

Fast and behavior-selective exploitation of a marine fish targeted by anglers

(2016) Josep Alós et al.   Scientific Reports

Sex Change in Clownfish: Molecular Insights from Transcriptome Analysis

(2016) Laura Casas et al.   Scientific Reports

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

Chromosome evolution in fishes: a new challenging proposal from Neotropical species

(2014) Mauro Nirchio et al.   Neotropical Ichthyology

Integration of mapped RNA-Seq reads into automatic training of eukaryotic gene finding algorithm

(2014) Alexandre Lomsadze et al.   NUCLEIC ACIDS RESEARCH

Rfam 12.0: updates to the RNA families database

(2014) Eric P. Nawrocki et al.   NUCLEIC ACIDS RESEARCH

Infernal 1.1: 100-fold faster RNA homology searches

(2013) E. P. Nawrocki et al.   BIOINFORMATICS

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

MITOS: Improved de novo metazoan mitochondrial genome annotation

(2012) Matthias Bernt et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

(2008) Brian J Haas et al.   GENOME BIOLOGY