Ribosome Abundance Control in Prokaryotes

Regulatory mechanisms underlying coordination of amino acid and glucose catabolism in Escherichia coli

(2019) Mattia Zampieri et al.   Nature Communications

Ribosomes are optimized for autocatalytic production

(2017) Shlomi Reuveni et al.   NATURE

A global resource allocation strategy governs growth transition kinetics of Escherichia coli

(2017) David W. Erickson et al.   NATURE

Structure and dynamics of bacterial ribosome biogenesis

(2017) Joseph H. Davis et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

ppGpp Binding to a Site at the RNAP-DksA Interface Accounts for Its Dramatic Effects on Transcription Initiation during the Stringent Response

(2016) Wilma Ross et al.   MOLECULAR CELL

Genome-wide study of mRNA degradation and transcript elongation in Escherichia coli

(2015) H. Chen et al.   Molecular Systems Biology

Recent functional insights into the role of (p)ppGpp in bacterial physiology

(2015) Vasili Hauryliuk et al.   NATURE REVIEWS MICROBIOLOGY

Engineered ribosomal RNA operon copy-number variants of E. coli reveal the evolutionary trade-offs shaping rRNA operon number

(2015) Zsuzsanna Gyorfy et al.   NUCLEIC ACIDS RESEARCH

Mechanistic links between cellular trade-offs, gene expression, and growth

(2015) Andrea Y. Weiße et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Emergence of robust growth laws from optimal regulation of ribosome synthesis

(2014) M. Scott et al.   Molecular Systems Biology

A traffic flow model for bio-polymerization processes

(2013) Lisa Davis et al.   JOURNAL OF MATHEMATICAL BIOLOGY

The Magic Spot: A ppGpp Binding Site on E. coli RNA Polymerase Responsible for Regulation of Transcription Initiation

(2013) Wilma Ross et al.   MOLECULAR CELL

Transimulation - Protein Biosynthesis Web Service

(2013) Marlena Siwiak et al.   PLoS One

Bacterial lifestyle shapes stringent response activation

(2013) Cara C. Boutte et al.   TRENDS IN MICROBIOLOGY

Measuring the dynamics of E. coli ribosome biogenesis using pulse-labeling and quantitative mass spectrometry

(2012) Stephen S. Chen et al.   Molecular BioSystems

SnapShot: Key Numbers in Biology

(2010) Uri Moran et al.   CELL

Discretely calibrated regulatory loops controlled by ppGpp partition gene induction across the ‘feast to famine’ gradient in Escherichia coli

(2010) Matthew F. Traxler et al.   MOLECULAR MICROBIOLOGY

Slow sites in an exclusion process with limited resources

(2010) Chris A. Brackley et al.   PHYSICAL REVIEW E

Accommodation of aminoacyl-tRNA into the ribosome involves reversible excursions along multiple pathways

(2010) P. C. Whitford et al.   RNA

Interdependence of Cell Growth and Gene Expression: Origins and Consequences

(2010) M. Scott et al.   SCIENCE

The Origins of Time-Delay in Template Biopolymerization Processes

(2010) Luis Mier-y-Terán-Romero et al.   PLoS Computational Biology

Shifts in growth strategies reflect tradeoffs in cellular economics

(2009) Douwe Molenaar et al.   Molecular Systems Biology

Control of bacterial transcription, translation and replication by (p)ppGpp

(2008) Anjana Srivatsan et al.   CURRENT OPINION IN MICROBIOLOGY

Stochasticity and traffic jams in the transcription of ribosomal RNA: Intriguing role of termination and antitermination

(2008) S. Klumpp et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA