Genomic signals of local adaptation in Picea crassifolia

Heritage genetics for adaptation to marginal soils in barley

(2023) Sidsel Birkelund Schmidt et al.   TRENDS IN PLANT SCIENCE

Genomic population structure and local adaptation of the wild strawberry Fragaria nilgerrensis

(2022) Yuxi Hu et al.   Horticulture Research

Genomic insights into the genotype‐environment mismatch and conservation units of a Qinghai‐Tibet Plateau endemic cypress under climate change

(2022) Heng Yang et al.   Evolutionary Applications

Involvement of Arabidopsis Acyl Carrier Protein 1 in PAMP-triggered immunity

(2022) Zhenzhen Zhao et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Transcriptome‐based analyses of adaptive divergence between two closely related spruce species on the Qinghai‐Tibet Plateau and adjacent regions

(2022) Shuo Feng et al.   MOLECULAR ECOLOGY

Genomic insights into local adaptation and future climate-induced vulnerability of a keystone forest tree in East Asia

(2022) Yupeng Sang et al.   Nature Communications

Genomic signals of local adaptation and hybridization in Asian white birch

(2022) Gabriele Nocchi et al.   MOLECULAR ECOLOGY

Regulation of Flowering Time by Ambient Temperature: Repressing the Repressors and Activating the Activators

(2021) Suhyun Jin et al.   NEW PHYTOLOGIST

Maladaptation, migration and extirpation fuel climate change risk in a forest tree species

(2021) Andrew V. Gougherty et al.   Nature Climate Change

Genomic analysis of field pennycress (Thlaspi arvense) provides insights into mechanisms of adaptation to high elevation

(2021) Yupeng Geng et al.   BMC BIOLOGY

Population transcriptomic sequencing reveals allopatric divergence and local adaptation in Pseudotaxus chienii (Taxaceae)

(2021) Li Liu et al.   BMC GENOMICS

Towards environmental Sustainability: Devolving the influence of carbon dioxide emission to population growth, climate change, Forestry, livestock and crops production in Pakistan

(2021) Abdul Rehman et al.   ECOLOGICAL INDICATORS

Genetic divergence and local adaptation of Liriodendron driven by heterogeneous environments

(2021) Yufang Shen et al.   MOLECULAR ECOLOGY

GTP binding to translation factor eIF2B stimulates its guanine nucleotide exchange activity

(2021) Christopher J. Kershaw et al.   iScience

Lipid Metabolism: Critical Roles in Male Fertility and Other Aspects of Reproductive Development in Plants

(2020) Xiangyuan Wan et al.   Molecular Plant

Effects of landscapes and range expansion on population structure and local adaptation

(2020) Wei Zhao et al.   NEW PHYTOLOGIST

Genomic insights into adaptation to heterogeneous environments for the ancient relictual Circaeaster agrestis (Circaeasteraceae, Ranunculales)

(2020) Xu Zhang et al.   NEW PHYTOLOGIST

The climatic association of population divergence and future extinction risk of Solanum pimpinellifolium

(2020) Ya-Ping Lin et al.   AoB Plants

Plant Glycosides and Glycosidases: A Treasure-Trove for Therapeutics

(2020) Kassiani Kytidou et al.   Frontiers in Plant Science

Genomic Prediction of (Mal)Adaptation Across Current and Future Climatic Landscapes

(2020) Thibaut Capblancq et al.   Annual Review of Ecology Evolution and Systematics

Massive haplotypes underlie ecotypic differentiation in sunflowers

(2020) Marco Todesco et al.   NATURE

Wetlands rise and fall: Six endangered wetland species showed different patterns of habitat shift under future climate change

(2020) Bo Cao et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Genomic vulnerability to rapid climate warming in a tree species with a long generation time

(2020) Benjamin Dauphin et al.   GLOBAL CHANGE BIOLOGY

Environment and pathogens shape local and regional adaptations to climate change in the chocolate tree, Theobroma cacao L.

(2020) Joel T. Nelson et al.   MOLECULAR ECOLOGY

Complete plastome sequences of Picea asperata and P. crassifolia and comparative analyses with P. abies and P. morrisonicola

(2019) Fangqun Ouyang et al.   GENOME

Considering adaptive genetic variation in climate change vulnerability assessment reduces species range loss projections

(2019) Orly Razgour et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Aspects of Forest Biomass in the Earth System: Its Role and Major Unknowns

(2019) Markus Reichstein et al.   SURVEYS IN GEOPHYSICS

Natural selection on the Arabidopsis thaliana genome in present and future climates

(2019) Moises Exposito-Alonso et al.   NATURE

Landscape genomics predicts climate change‐related genetic offset for the widespread Platycladus orientalis (Cupressaceae)

(2019) Kai‐Hua Jia et al.   Evolutionary Applications

Adaptational lag to temperature in valley oak (Quercus lobata) can be mitigated by genome-informed assisted gene flow

(2019) Luke Browne et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fragmented and isolated: limited gene flow coupled with weak isolation by environment in the paleoendemic giant sequoia ( Sequoiadendron giganteum )

(2019) Rainbow DeSilva et al.   AMERICAN JOURNAL OF BOTANY

Forest genomics: Advancing climate adaptation, forest health, productivity, and conservation

(2019) Nathalie Isabel et al.   Evolutionary Applications

OUP accepted manuscript

(2018)   BIOINFORMATICS

Comparing methods for detecting multilocus adaptation with multivariate genotype-environment associations

(2018) Brenna R. Forester et al.   MOLECULAR ECOLOGY

Adaptive genetic differentiation in Pterocarya stenoptera (Juglandaceae) driven by multiple environmental variables were revealed by landscape genomics

(2018) Jia-Xin Li et al.   BMC PLANT BIOLOGY

Population genomic analysis reveals that homoploid hybrid speciation can be a lengthy process

(2018) Dafu Ru et al.   MOLECULAR ECOLOGY

Trees, forests and water: Cool insights for a hot world

(2017) David Ellison et al.   GLOBAL ENVIRONMENTAL CHANGE-HUMAN AND POLICY DIMENSIONS

A global review on hydrological responses to forest change across multiple spatial scales: Importance of scale, climate, forest type and hydrological regime

(2017) Mingfang Zhang et al.   JOURNAL OF HYDROLOGY

Advances in ecological genomics in forest trees and applications to genetic resources conservation and breeding

(2017) Jason A. Holliday et al.   MOLECULAR ECOLOGY

ModelFinder: fast model selection for accurate phylogenetic estimates

(2017) Subha Kalyaanamoorthy et al.   NATURE METHODS

Ten Years of Landscape Genomics: Challenges and Opportunities

(2017) Yong Li et al.   Frontiers in Plant Science

Genomic evidence for polyphyletic origins and interlineage gene flow within complex taxa: a case study ofPicea brachytylain the Qinghai-Tibet Plateau

(2016) Dafu Ru et al.   MOLECULAR ECOLOGY

Genetic consequences of Quaternary climatic oscillations in the Himalayas: Primula tibetica as a case study based on restriction site-associated DNA sequencing

(2016) Guangpeng Ren et al.   NEW PHYTOLOGIST

Climate change impacts and adaptation in forest management: a review

(2015) Rodney J. Keenan   ANNALS OF FOREST SCIENCE

Constraints to and conservation implications for climate change adaptation in plants

(2015) Matthew J. Christmas et al.   CONSERVATION GENETICS

A practical guide to environmental association analysis in landscape genomics

(2015) Christian Rellstab et al.   MOLECULAR ECOLOGY

The relative power of genome scans to detect local adaptation depends on sampling design and statistical method

(2015) Katie E. Lotterhos et al.   MOLECULAR ECOLOGY

Genetic considerations in ecosystem restoration using native tree species

(2014) Evert Thomas et al.   FOREST ECOLOGY AND MANAGEMENT

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Climatic adaptation and ecological divergence between two closely related pine species in Southeast China

(2014) Yongfeng Zhou et al.   MOLECULAR ECOLOGY

Glucosylation of Isoflavonoids in Engineered Escherichia coli

(2014) Ramesh Prasad Pandey et al.   MOLECULES AND CELLS

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Advances and limits of using population genetics to understand local adaptation

(2014) Peter Tiffin et al.   TRENDS IN ECOLOGY & EVOLUTION

SDMtoolbox: a python-based GIS toolkit for landscape genetic, biogeographic and species distribution model analyses

(2014) Jason L. Brown   Methods in Ecology and Evolution

STRONG SELECTION BARRIERS EXPLAIN MICROGEOGRAPHIC ADAPTATION IN WILD SALAMANDER POPULATIONS

(2013) Jonathan L. Richardson et al.   EVOLUTION

Temperature and the catalytic activity of enzymes: A fresh understanding

(2013) Roy M. Daniel et al.   FEBS LETTERS

A new phylogeny for the genus Picea from plastid, mitochondrial, and nuclear sequences

(2013) Jared D. Lockwood et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Ecological genomics of local adaptation

(2013) Outi Savolainen et al.   NATURE REVIEWS GENETICS

Genome sequencing and population genomics in non-model organisms

(2013) Hans Ellegren   TRENDS IN ECOLOGY & EVOLUTION

clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

(2012) Guangchuang Yu et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Enhancements to the ADMIXTURE algorithm for individual ancestry estimation

(2011) David H Alexander et al.   BMC BIOINFORMATICS

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

Forest tree genomics: growing resources and applications

(2011) David B. Neale et al.   NATURE REVIEWS GENETICS

A Map of Local Adaptation in Arabidopsis thaliana

(2011) A. Fournier-Level et al.   SCIENCE

Evolutionary genetics of plant adaptation

(2011) Jill T. Anderson et al.   TRENDS IN GENETICS

ENMTools: a toolbox for comparative studies of environmental niche models

(2010) Dan L. Warren et al.   ECOGRAPHY

Application of single nucleotide polymorphisms to non-model species: a technical review

(2010) M. R. GARVIN et al.   Molecular Ecology Resources

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

Genomics and the future of conservation genetics

(2010) Fred W. Allendorf et al.   NATURE REVIEWS GENETICS

Fine-scale spatial genetic structure and gene flow in a small, fragmented population of Sinojackia rehderiana (Styracaceae), an endangered tree species endemic to China

(2010) X. Yao et al.   PLANT BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Adaptation, migration or extirpation: climate change outcomes for tree populations

(2008) Sally N. Aitken et al.   Evolutionary Applications

Genetic and bioclimatic variation in Solanum pimpinellifolium

(2008) Elena Zuriaga et al.   GENETIC RESOURCES AND CROP EVOLUTION