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(2023) Xiaohan Jiang et al.   BMC PLANT BIOLOGY

The chromosome-level genome of Eucommia ulmoides provides insights into sex differentiation and α-linolenic acid biosynthesis

(2023) Qingxin Du et al.   Frontiers in Plant Science

Genome-wide identification and expression analysis of MADS-box transcription factors reveal their involvement in sex determination of hardy rubber tree (Eucommia ulmoides oliv.)

(2023) Xianzhi Zhang et al.   Frontiers in Genetics

Sex-linked Single Nucleotide Polymorphism (SNP) identification and molecular marker development of salacca (Salacca zalacca (Gaertn.) Voss)

(2023) RIRY PRIHATINI et al.   Biodiversitas

Differences in the Growth of Seedlings and the Selection of Fast-Growing Species in the Gleditsia Genus

(2023) Feng Xiao et al.   Forests

Genome-wide analysis of the long noncoding RNAs and mRNAs involved in flower bud development of Eucommia ulmoides Oliver

(2022) Jun Qing et al.   SCIENTIA HORTICULTURAE

The Roles of MADS-Box Genes from Root Growth to Maturity in Arabidopsis and Rice

(2022) Liaqat Shah et al.   Agronomy-Basel

Morpho-histology, endogenous hormone dynamics, and transcriptome profiling in Dacrydium pectinatum during female cone development

(2022) Enbo Wang et al.   Frontiers in Plant Science

Lilac (Syringa oblata) genome provides insights into its evolution and molecular mechanism of petal color change

(2022) Bo Ma et al.   Communications Biology

The genome of Areca catechu provides insights into sex determination of monoecious plants

(2022) Guangzhen Zhou et al.   NEW PHYTOLOGIST

A convergent mechanism of sex determination in dioecious plants: Distinct sex-determining genes display converged regulation on floral B-class genes

(2022) Xianzhi Zhang et al.   Frontiers in Plant Science

Exploring the Molecular Mechanism of Sepal Formation in the Decorative Flowers of Hydrangea macrophylla ′Endless Summer′ Based on the ABCDE Model

(2022) Qi Wang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

An Overview of Molecular Basis and Genetic Modification of Floral Organs Genes: Impact of Next-Generation Sequencing

(2022) Reshma V. Patil et al.   MOLECULAR BIOTECHNOLOGY

Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2023

(2022) et al.   NUCLEIC ACIDS RESEARCH

Differential gene expression patterns during gametophyte development provide insights into sex differentiation in the dioicous kelp Saccharina japonica

(2021) Jiaxun Zhang et al.   BMC PLANT BIOLOGY

Long-read transcriptome and other genomic resources for the angiosperm Silene noctiflora

(2021) Alissa M Williams et al.   G3-Genes Genomes Genetics

Genome and Transcriptome Sequencing of Populus × sibirica Identified Sex-Associated Allele-Specific Expression of the CLC Gene

(2021) Elena N. Pushkova et al.   Frontiers in Genetics

Crosslink: An R Package for Network Visualization of Grouped Nodes

(2021) Di Liu et al.   Frontiers in Genetics

Sex biased expression of hormone related genes at early stage of sex differentiation in papaya flowers

(2021) Juan Liu et al.   Horticulture Research

The Genome Sequence Archive Family: Toward Explosive Data Growth and Diverse Data Types

(2021) Tingting Chen et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

The jojoba genome reveals wide divergence of the sex chromosomes in a dioecious plant

(2021) Othman Al‐Dossary et al.   PLANT JOURNAL

Re-epithelialization and immune cell behaviour in an ex vivo human skin model

(2020) Ana Rakita et al.   Scientific Reports

Pathways to sex determination in plants: how many roads lead to Rome?

(2020) Guanqiao Feng et al.   CURRENT OPINION IN PLANT BIOLOGY

Transcriptomic analysis of flower color variation in the ornamental crabapple (Malus spp.) half-sib family through Illumina and PacBio Sequel sequencing

(2020) Bin Huang et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Genome-wide analysis of microsatellite and sex-linked marker identification in Gleditsia sinensis

(2020) Jianjun Li et al.   BMC PLANT BIOLOGY

Chromosome-level genome assembly of a parent species of widely cultivated azaleas

(2020) Fu-Sheng Yang et al.   Nature Communications

Comparative transcriptome analysis of male and female flowers in Spinacia oleracea L

(2020) Ning Li et al.   BMC GENOMICS

Comparative transcriptomics method to infer gene coexpression networks and its applications to maize and rice leaf transcriptomes

(2019) Yao-Ming Chang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Flower bud proteome reveals modulation of sex-biased proteins potentially associated with sex expression and modification in dioecious Coccinia grandis

(2019) Ravi Suresh Devani et al.   BMC PLANT BIOLOGY

Comparative transcriptome analysis combining SMRT and NGS sequencing provides novel insights into sex differentiation and development in mud crab (Scylla paramamosain)

(2019) Jiali Lin et al.   AQUACULTURE

Anatomy of the Windmill Palm (Trachycarpus fortunei) and Its Application Potential

(2019) Jiawei Zhu et al.   Forests

Genomic Survey, Transcriptome, and Metabolome Analysis of Apocynum venetum and Apocynum hendersonii to Reveal Major Flavonoid Biosynthesis Pathways

(2019) Gang Gao et al.   Metabolites

OUP accepted manuscript

(2018)   BIOINFORMATICS

Genome-wide transcriptome profiling of the medicinal plant Zanthoxylum planispinum using a single-molecule direct RNA sequencing approach

(2018) Jung-A Kim et al.   GENOMICS

Genus-wide sequencing supports a two-locus model for sex-determination in Phoenix

(2018) Maria F. Torres et al.   Nature Communications

Identification of the Sex-Biased Gene Expression and Putative Sex-Associated Genes in Eucommia ulmoides Oliver Using Comparative Transcriptome Analyses

(2017) Wencai Wang et al.   MOLECULES

Long read reference genome-free reconstruction of a full-length transcriptome from Astragalus membranaceus reveals transcript variants involved in bioactive compound biosynthesis

(2017) Jun Li et al.   Cell Discovery

The palm family (Arecaceae): a microcosm of sexual system evolution

(2016) Sophie Nadot et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Thesuperwoman1-cleistogamy2mutant is a novel resource for gene containment in rice

(2016) Fabien Lombardo et al.   PLANT BIOTECHNOLOGY JOURNAL

Seed Set and Natural Regeneration of Dendrocalamus membranaceus Munro after Mass and Sporadic Flowering in Yunnan, China

(2016) Ning Xie et al.   PLoS One

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

PacBio Sequencing and Its Applications

(2015) Anthony Rhoads et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Flower development and sex specification in wild grapevine

(2014) Miguel Jesus Ramos et al.   BMC GENOMICS

Early mass-flowering crops mitigate pollinator dilution in late-flowering crops

(2013) Verena Riedinger et al.   LANDSCAPE ECOLOGY

Mass flowering of the tropical treeShorea beccarianawas preceded by expression changes in flowering and drought-responsive genes

(2013) Masaki J. Kobayashi et al.   MOLECULAR ECOLOGY

CPAT: Coding-Potential Assessment Tool using an alignment-free logistic regression model

(2013) Liguo Wang et al.   NUCLEIC ACIDS RESEARCH

Utilizing sequence intrinsic composition to classify protein-coding and long non-coding transcripts

(2013) Liang Sun et al.   NUCLEIC ACIDS RESEARCH

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Species and Population Level Molecular Profiling Reveals Cryptic Recombination and Emergent Asymmetry in the Dimorphic Mating Locus of C. reinhardtii

(2013) Peter L. De Hoff et al.   PLoS Genetics

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Further Characterization of a Rice AGL12 Group MADS-Box Gene, OsMADS26

(2008) S. Lee et al.   PLANT PHYSIOLOGY