Palmitoylation modifies transmembrane adaptor protein PAG for ordered lipid environment: A molecular dynamics simulation study

The Two Faces of the Liquid Ordered Phase

(2022) Itay Schachter et al.   Journal of Physical Chemistry Letters

The role of prolines and glycine in the transmembrane domain of LAT

(2021) Daniela Glatzová et al.   FEBS Journal

S-acylation controls SARS-CoV-2 membrane lipid organization and enhances infectivity

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Interpretation of Phase Boundary Fluctuation Spectra in Biological Membranes with Nanoscale Organization

(2020) Sahithya S. Iyer et al.   Journal of Chemical Theory and Computation

Dynamic palmitoylation events following T-cell receptor signaling

(2020) Eliot Morrison et al.   Communications Biology

UniProt: the universal protein knowledgebase in 2021

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Hemagglutinin of Influenza A, but not of Influenza B and C viruses is acylated by ZDHHC2, 8, 15 and 20

(2019) Mohamed Rasheed Gadalla et al.   BIOCHEMICAL JOURNAL

Protein Partitioning into Ordered Membrane Domains: Insights from Simulations

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Structural determinants and functional consequences of protein affinity for membrane rafts

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Excessive aggregation of membrane proteins in the Martini model

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The role of palmitoylation and transmembrane domain in sorting of transmembrane adaptor proteins

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Lipid-protein interplay and lateral organization in biomembranes

(2015) Thomas K.M. Nyholm   CHEMISTRY AND PHYSICS OF LIPIDS

CHARMM-GUI Input Generator for NAMD, GROMACS, AMBER, OpenMM, and CHARMM/OpenMM Simulations Using the CHARMM36 Additive Force Field

(2015) Jumin Lee et al.   Journal of Chemical Theory and Computation

Curation of the Mammalian Palmitoylome Indicates a Pivotal Role for Palmitoylation in Diseases and Disorders of the Nervous System and Cancers

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Universal Method for Embedding Proteins into Complex Lipid Bilayers for Molecular Dynamics Simulations

(2014) Matti Javanainen   Journal of Chemical Theory and Computation

Phase Diagram and Tie-Line Determination for the Ternary Mixture DOPC/eSM/Cholesterol

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CHARMM36 all-atom additive protein force field: Validation based on comparison to NMR data

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Predictions of Phase Separation in Three-Component Lipid Membranes by the MARTINI Force Field

(2013) Ryan S. Davis et al.   JOURNAL OF PHYSICAL CHEMISTRY B

The Molecular Structure of the Liquid-Ordered Phase of Lipid Bilayers

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Raft domains of variable properties and compositions in plasma membrane vesicles

(2011) I. Levental et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Revisiting Hydrophobic Mismatch with Free Energy Simulation Studies of Transmembrane Helix Tilt and Rotation

(2010) Taehoon Kim et al.   BIOPHYSICAL JOURNAL

The Palmitoylation Machinery Is a Spatially Organizing System for Peripheral Membrane Proteins

(2010) Oliver Rocks et al.   CELL

The intracellular dynamic of protein palmitoylation

(2010) Christine Salaun et al.   JOURNAL OF CELL BIOLOGY

CHARMM: The biomolecular simulation program

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Protein modulation of lipids, and vice-versa, in membranes

(2008) Derek Marsh   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

CHARMM-GUI: A web-based graphical user interface for CHARMM

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Palmitoylation and ubiquitination regulate exit of the Wnt signaling protein LRP6 from the endoplasmic reticulum

(2008) L. Abrami et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA