In silico discovery of epitopes of gag and env proteins for the development of a multi-epitope vaccine candidate against Maedi Visna Virus using reverse vaccinology approach

Development of a new serotyping ELISA for Toxoplasma gondii type II, type III and Africa 1 lineages using in silico peptide discovery methods, well categorized feline and human outbreak serum samples

(2022) Hüseyin Can et al.   BMC INFECTIOUS DISEASES

Peptide-Based Vaccines: Foot-and-Mouth Disease Virus, a Paradigm in Animal Health

(2021) Mar Forner et al.   Vaccines

Construction of a multiepitope vaccine candidate against Fasciola hepatica: an in silico design using various immunogenic excretory/secretory antigens

(2021) Mesut Akıl et al.   Expert Review of Vaccines

New highly antigenic linear B cell epitope peptides from PvAMA-1 as potential vaccine candidates

(2021) Raianna F. Fantin et al.   PLoS One

Etiology, Epizootiology and Control of Maedi-Visna in Dairy Sheep: A Review

(2020) Aphrodite I. Kalogianni et al.   Animals

Computational design of a novel multi-epitope vaccine against Coxiella burnetii

(2020) Amin Jaydari et al.   HUMAN IMMUNOLOGY

In silico discovery of antigenic proteins and epitopes of SARS-CoV-2 for the development of a vaccine or a diagnostic approach for COVID-19

(2020) Hüseyin Can et al.   Scientific Reports

Perspectives in Peptide-Based Vaccination Strategies for Syndrome Coronavirus 2 Pandemic

(2020) Concetta Di Natale et al.   Frontiers in Pharmacology

Region-Based Epitope Prediction, Docking and Dynamic Studies of OMP31 as a Dominant Antigen in Human and Sheep Brucella

(2019) Saeideh Mohammad Hasani et al.   International Journal of Peptide Research and Therapeutics

Reverse vaccinology approach to design a novel multi-epitope subunit vaccine against avian influenza A (H7N9) virus

(2019) Mahmudul Hasan et al.   MICROBIAL PATHOGENESIS

The EMBL-EBI search and sequence analysis tools APIs in 2019

(2019) Fábio Madeira et al.   NUCLEIC ACIDS RESEARCH

Assembling multidomain protein structures through analogous global structural alignments

(2019) Xiaogen Zhou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Immunoinformatics approaches for designing a novel multi epitope peptide vaccine against human norovirus (Norwalk virus)

(2019) Kazi Faizul Azim et al.   INFECTION GENETICS AND EVOLUTION

The Immune Epitope Database (IEDB): 2018 update

(2018) Randi Vita et al.   NUCLEIC ACIDS RESEARCH

Toll-like receptor 4 in acute viral infection: Too much of a good thing

(2018) Judith Olejnik et al.   PLoS Pathogens

The ClusPro web server for protein–protein docking

(2017) Dima Kozakov et al.   Nature Protocols

Pep-Calc.com: a set of web utilities for the calculation of peptide and peptoid properties and automatic mass spectral peak assignment

(2016) Sam Lear et al.   JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

RaptorX-Property: a web server for protein structure property prediction

(2016) Sheng Wang et al.   NUCLEIC ACIDS RESEARCH

Overcoming CD4 Th1 Cell Fate Restrictions to Sustain Antiviral CD8 T Cells and Control Persistent Virus Infection

(2016) Laura M. Snell et al.   Cell Reports

Identification of Novel Vaccine Candidates againstCampylobacterthrough Reverse Vaccinology

(2016) Marine Meunier et al.   Journal of Immunology Research

A Web Server and Mobile App for Computing Hemolytic Potency of Peptides

(2016) Kumardeep Chaudhary et al.   Scientific Reports

The I-TASSER Suite: protein structure and function prediction

(2015) Jianyi Yang et al.   NATURE METHODS

Small ruminant lentivirus infections and diseases

(2015) E. Minguijón et al.   VETERINARY MICROBIOLOGY

iMODS: internal coordinates normal mode analysis server

(2014) José Ramón López-Blanco et al.   NUCLEIC ACIDS RESEARCH

Deciphering key features in protein structures with the new ENDscript server

(2014) Xavier Robert et al.   NUCLEIC ACIDS RESEARCH

A Potential Protein Adjuvant Derived from Mycobacterium tuberculosis Rv0652 Enhances Dendritic Cells-Based Tumor Immunotherapy

(2014) Seung Jun Lee et al.   PLoS One

AllerTOP - a server for in silico prediction of allergens

(2013) Ivan Dimitrov et al.   BMC BIOINFORMATICS

GalaxyRefine: protein structure refinement driven by side-chain repacking

(2013) Lim Heo et al.   NUCLEIC ACIDS RESEARCH

In Silico Approach for Predicting Toxicity of Peptides and Proteins

(2013) Sudheer Gupta et al.   PLoS One

Virus-mPLoc: A Fusion Classifier for Viral Protein Subcellular Location Prediction by Incorporating Multiple Sites

(2012) Hong-Bin Shen et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

A complete DNA sequence map of the ovine Major Histocompatibility Complex

(2010) Jianfeng Gao et al.   BMC GENOMICS

Visna/maedi virus serology in sheep: Survey, risk factors and implementation of a successful control programme in Aragón (Spain)

(2009) M. Pérez et al.   VETERINARY JOURNAL

High-performance signal peptide prediction based on sequence alignment techniques

(2008) K. Frank et al.   BIOINFORMATICS

ElliPro: a new structure-based tool for the prediction of antibody epitopes

(2008) Julia Ponomarenko et al.   BMC BIOINFORMATICS