Mono-valent salt corrections for RNA secondary structures in the ViennaRNA package

CODATA recommended values of the fundamental physical constants: 2018

(2021) Eite Tiesinga et al.   REVIEWS OF MODERN PHYSICS

Replacing salt correction factors with optimized RNA nearest-neighbour enthalpy and entropy parameters

(2019) Izabela Ferreira et al.   CHEMICAL PHYSICS

Theory and simulations for RNA folding in mixtures of monovalent and divalent cations

(2019) Hung T. Nguyen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Advanced multi-loop algorithms for RNA secondary structure prediction reveal that the simplest model is best

(2017) Max Ward et al.   NUCLEIC ACIDS RESEARCH

On approximating the modified Bessel function of the second kind

(2017) Zhen-Hang Yang et al.   JOURNAL OF INEQUALITIES AND APPLICATIONS

Metal Cations in G-Quadruplex Folding and Stability

(2016) Debmalya Bhattacharyya et al.   Frontiers in Chemistry

Understanding Nucleic Acid–Ion Interactions

(2014) Jan Lipfert et al.   Annual Review of Biochemistry

The thermodynamics of DNA loop formation, fromJtoZ

(2013) Stephen D. Levene et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Effect of Sodium Ions on RNA Duplex Stability

(2013) Zexiang Chen et al.   BIOCHEMISTRY

2D Meets 4G: G-Quadruplexes in RNA Secondary Structure Prediction

(2013) Ronny Lorenz et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

The persistence length and length per base of single-stranded DNA obtained from fluorescence correlation spectroscopy measurements using mean field theory

(2012) Qingjia Chi et al.   PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS

ViennaRNA Package 2.0

(2011) Ronny Lorenz et al.   Algorithms for Molecular Biology

Theory for RNA Folding, Stretching, and Melting Including Loops and Salt

(2011) Thomas R. Einert et al.   BIOPHYSICAL JOURNAL

NNDB: the nearest neighbor parameter database for predicting stability of nucleic acid secondary structure

(2009) Douglas H. Turner et al.   NUCLEIC ACIDS RESEARCH

RNA Folding: Thermodynamic and Molecular Descriptions of the Roles of Ions

(2008) David E. Draper   BIOPHYSICAL JOURNAL

Salt Dependence of Nucleic Acid Hairpin Stability

(2008) Zhi-Jie Tan et al.   BIOPHYSICAL JOURNAL

RNA STRAND: The RNA Secondary Structure and Statistical Analysis Database

(2008) Mirela Andronescu et al.   BMC BIOINFORMATICS