Differences in genome, transcriptome, miRNAome, and methylome in synchronous and metachronous liver metastasis of colorectal cancer

Understanding the role of the gut microbiome in gastrointestinal cancer: A review

(2023) Duygu Ağagündüz et al.   Frontiers in Pharmacology

Genome-Wide DNA Methylation in Policemen Working in Cities Differing by Major Sources of Air Pollution

(2022) Katerina Honkova et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Mutational analysis of driver genes defines the colorectal adenoma: in situ carcinoma transition

(2022) Jungwirth Jiri et al.   Scientific Reports

Integrative Genomic Analyses of 1,145 Patient Samples Reveal New Biomarkers in Esophageal Squamous Cell Carcinoma

(2022) Binbin Zou et al.   Frontiers in Molecular Biosciences

Coprophagy Prevention Affects the Reproductive Performance in New Zealand White Rabbits Is Mediated through Nox4-ROS-NFκB Pathway

(2022) Zhichao Li et al.   Oxidative Medicine and Cellular Longevity

Enhancing the landscape of colorectal cancer using targeted deep sequencing

(2021) Chul Seung Lee et al.   Scientific Reports

Analysis of MicroRNA Expression Changes During the Course of Therapy In Rectal Cancer Patients

(2021) Klara Cervena et al.   Frontiers in Oncology

Different variables predict the outcome of patients with synchronous versus metachronous metastases of colorectal cancer

(2020) G. A. Colloca et al.   Clinical & Translational Oncology

Distant Metastasis in Colorectal Cancer Patients—Do We Have New Predicting Clinicopathological and Molecular Biomarkers? A Comprehensive Review

(2020) Stanislav Filip et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Small Non-Coding RNA Profiling in Plasma Extracellular Vesicles of Bladder Cancer Patients by Next-Generation Sequencing: Expression Levels of miR-126-3p and piR-5936 Increase with Higher Histologic Grades

(2020) Alexandru A. Sabo et al.   Cancers

SMOC2, an intestinal stem cell marker, is an independent prognostic marker associated with better survival in colorectal cancers

(2020) Bo Gun Jang et al.   Scientific Reports

IPO5 promotes the proliferation and tumourigenicity of colorectal cancer cells by mediating RASAL2 nuclear transportation

(2019) Wenjuan Zhang et al.   JOURNAL OF EXPERIMENTAL & CLINICAL CANCER RESEARCH

The landscape of genomic copy number alterations in colorectal cancer and their consequences on gene expression levels and disease outcome

(2019) Thomas Ried et al.   MOLECULAR ASPECTS OF MEDICINE

Synchronous and metachronous liver metastases in patients with colorectal cancer—towards a clinically relevant definition

(2019) Jennie Engstrand et al.   World Journal of Surgical Oncology

Colorectal cancer liver metastases – a population-based study on incidence, management and survival

(2018) Jennie Engstrand et al.   BMC CANCER

Karyopherins in cancer

(2018) Tolga Çağatay et al.   CURRENT OPINION IN CELL BIOLOGY

Clinical significance and prognostic relevance of KRAS, BRAF, PI3K and TP53 genetic mutation analysis for resectable and unresectable colorectal liver metastases: A systematic review of the current evidence

(2018) Diamantis I. Tsilimigras et al.   SURGICAL ONCOLOGY-OXFORD

Biomarkers for predicting efficacy of PD-1/PD-L1 inhibitors

(2018) Ming Yi et al.   Molecular Cancer

Tumor mutational burden is a determinant of immune-mediated survival in breast cancer

(2018) Alexandra Thomas et al.   OncoImmunology

Controlling the Gatekeeper: Therapeutic Targeting of Nuclear Transport

(2018) Friederike Kosyna et al.   Cells

Origins of lymphatic and distant metastases in human colorectal cancer

(2017) Kamila Naxerova et al.   SCIENCE

DNA copy number changes define spatial patterns of heterogeneity in colorectal cancer

(2017) Soulafa Mamlouk et al.   Nature Communications

MultiQC: summarize analysis results for multiple tools and samples in a single report

(2016) Philip Ewels et al.   BIOINFORMATICS

The prognostic role of systemic inflammation in patients undergoing resection of colorectal liver metastases: C-reactive protein (CRP) is a strong negative prognostic biomarker

(2016) Anne Helene Køstner et al.   JOURNAL OF SURGICAL ONCOLOGY

ReactomePA: an R/Bioconductor package for reactome pathway analysis and visualization

(2016) Guangchuang Yu et al.   Molecular BioSystems

miR-625-3p regulates oxaliplatin resistance by targeting MAP2K6-p38 signalling in human colorectal adenocarcinoma cells

(2016) Mads Heilskov Rasmussen et al.   Nature Communications

An evaluation of statistical methods for DNA methylation microarray data analysis

(2015) Dongmei Li et al.   BMC BIOINFORMATICS

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

Loss of the tumor suppressor spinophilin (PPP1R9B) increases the cancer stem cell population in breast tumors

(2015) I Ferrer et al.   ONCOGENE

miR-1269 promotes metastasis and forms a positive feedback loop with TGF-β

(2015) Pengcheng Bu et al.   Nature Communications

Macromolecular transport between the nucleus and the cytoplasm: Advances in mechanism and emerging links to disease

(2014) Elizabeth J. Tran et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays

(2014) Martin J. Aryee et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Management of colorectal cancer presenting with synchronous liver metastases

(2014) Ajith K. Siriwardena et al.   Nature Reviews Clinical Oncology

Serum miR-200c Is a Novel Prognostic and Metastasis-Predictive Biomarker in Patients With Colorectal Cancer

(2013) Yuji Toiyama et al.   ANNALS OF SURGERY

Spinophilin Loss Correlates with Poor Patient Prognosis in Advanced Stages of Colon Carcinoma

(2013) P. Estevez-Garcia et al.   CLINICAL CANCER RESEARCH

Timing of hepatectomy in resectable synchronous colorectal liver metastases (SCRLM): Simultaneous or delayed?

(2013) Zi Yin et al.   HEPATOLOGY

Specific Extracellular Matrix Remodeling Signature of Colon Hepatic Metastases

(2013) Maguy Del Rio et al.   PLoS One

Inferring tumour purity and stromal and immune cell admixture from expression data

(2013) Kosuke Yoshihara et al.   Nature Communications

Radiofrequency ablation combined with systemic treatment versus systemic treatment alone in patients with non-resectable colorectal liver metastases: a randomized EORTC Intergroup phase II study (EORTC 40004)

(2012) T. Ruers et al.   ANNALS OF ONCOLOGY

The sva package for removing batch effects and other unwanted variation in high-throughput experiments

(2012) Jeffrey T. Leek et al.   BIOINFORMATICS

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Metachronous metastasis- and survival-analysis show prognostic importance of lymphadenectomy for colon carcinomas

(2012) Tilman Laubert et al.   BMC GASTROENTEROLOGY

Systematic review and meta-analysis of follow-up after hepatectomy for colorectal liver metastases

(2012) R. P. Jones et al.   BRITISH JOURNAL OF SURGERY

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

NMDAR signaling facilitates the IPO5-mediated nuclear import of CPEB3

(2012) Hsu-Wen Chao et al.   NUCLEIC ACIDS RESEARCH

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Prognostic models for outcome following liver resection for colorectal cancer metastases: A systematic review

(2011) L. Spelt et al.   EJSO

Predictors of long-term survival in patients with colorectal liver metastases: a single center study and review of the literature

(2011) Utz Settmacher et al.   INTERNATIONAL JOURNAL OF COLORECTAL DISEASE

APOBEC3G promotes liver metastasis in an orthotopic mouse model of colorectal cancer and predicts human hepatic metastasis

(2011) Qingqing Ding et al.   JOURNAL OF CLINICAL INVESTIGATION

Current treatment for colorectal liver metastases

(2011) Evangelos P Misiakos   WORLD JOURNAL OF GASTROENTEROLOGY

The American Joint Committee on Cancer: the 7th Edition of the AJCC Cancer Staging Manual and the Future of TNM

(2010) Stephen B. Edge et al.   ANNALS OF SURGICAL ONCOLOGY

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

Clinicopathological features and outcome in advanced colorectal cancer patients with synchronous vs metachronous metastases

(2010) L J M Mekenkamp et al.   BRITISH JOURNAL OF CANCER

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS