A network perspective on the ecology of gut microbiota and progression of type 2 diabetes: Linkages to keystone taxa in a Mexican cohort
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Title
A network perspective on the ecology of gut microbiota and progression of type 2 diabetes: Linkages to keystone taxa in a Mexican cohort
Authors
Keywords
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Journal
Frontiers in Endocrinology
Volume 14, Issue -, Pages -
Publisher
Frontiers Media SA
Online
2023-04-12
DOI
10.3389/fendo.2023.1128767
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Note: Only part of the references are listed.- Metabolic modelling of the human gut microbiome in type 2 diabetes patients in response to metformin treatment
- (2023) Bouchra Ezzamouri et al. npj Systems Biology and Applications
- Hypertension- and glycaemia-lowering effects of a grape-pomace-derived seasoning in high-cardiovascular risk and healthy subjects. Interplay with the gut microbiome
- (2022) Diego Taladrid et al. Food & Function
- A randomization-based causal inference framework for uncovering environmental exposure effects on human gut microbiota
- (2022) Alice J. Sommer et al. PLoS Computational Biology
- Butyrate-Producing Bacteria and Insulin Homeostasis: The Microbiome and Insulin Longitudinal Evaluation Study (MILES)
- (2022) Jinrui Cui et al. DIABETES
- Diet-Associated Variability in the Elderly Gut Microbiome
- (2022) Dorrain Low et al. Current Developments in Nutrition
- Type 2 diabetes, gut microbiome, and systems biology: A novel perspective for a new era
- (2022) Yoscelina Estrella Martínez-López et al. Gut Microbes
- Patient stratification for determining optimal second-line and third-line therapy for type 2 diabetes: the TriMaster study
- (2022) Beverley M. Shields et al. NATURE MEDICINE
- Progressive Shifts in the Gut Microbiome Reflect Prediabetes and Diabetes Development in a Treatment-Naive Mexican Cohort
- (2021) Christian Diener et al. Frontiers in Endocrinology
- Machine learning applications in microbial ecology, human microbiome studies, and environmental monitoring
- (2021) Ryan B. Ghannam et al. Computational and Structural Biotechnology Journal
- Pathophysiology linking depression and type 2 diabetes: Psychotherapy, physical exercise, and fecal microbiome transplantation as damage control
- (2021) Rhea Subba et al. EUROPEAN JOURNAL OF NEUROSCIENCE
- Microbial ecology in selenate‐reducing biofilm communities: Rare biosphere and their interactions with abundant phylotypes
- (2021) Diego A. Esquivel‐Hernández et al. BIOTECHNOLOGY AND BIOENGINEERING
- Defined gut microbial communities: promising tools to understand and combat disease
- (2021) Giuliano Bayer et al. MICROBES AND INFECTION
- Characteristics of the gut microbiome in patients with prediabetes and type 2 diabetes
- (2021) Zewen Zhang et al. PeerJ
- Gut Microbiota of Chinese Obese Children and Adolescents With and Without Insulin Resistance
- (2021) Xin Yuan et al. Frontiers in Endocrinology
- Conversion of dietary inositol into propionate and acetate by commensal Anaerostipes associates with host health
- (2021) Thi Phuong Nam Bui et al. Nature Communications
- Gut Microbiota Profile and Its Association with Clinical Variables and Dietary Intake in Overweight/Obese and Lean Subjects: A Cross-Sectional Study
- (2021) Judit Companys et al. Nutrients
- A Review of Current Trends with Type 2 Diabetes Epidemiology, Aetiology, Pathogenesis, Treatments and Future Perspectives
- (2021) Josh Reed et al. Diabetes Metabolic Syndrome and Obesity-Targets and Therapy
- Association of Insulin Resistance and Type 2 Diabetes With Gut Microbial Diversity
- (2021) Zhangling Chen et al. JAMA Network Open
- Long-term Proton Pump Inhibitor Administration Caused Physiological and Microbiota Changes in Rats
- (2020) Yu-Chen S. H. Yang et al. Scientific Reports
- Gut Microbiome Profiles Are Associated With Type 2 Diabetes in Urban Africans
- (2020) Ayo P. Doumatey et al. Frontiers in Cellular and Infection Microbiology
- Role of gut microbiota in type 2 diabetes pathophysiology
- (2020) Manoj Gurung et al. EBioMedicine
- MICOM: Metagenome-Scale Modeling To Infer Metabolic Interactions in the Gut Microbiota
- (2020) Christian Diener et al. mSystems
- Implication of the gut microbiome composition of type 2 diabetic patients from northern China
- (2020) Qian Li et al. Scientific Reports
- The Gut Microbiota in Prediabetes and Diabetes: A Population-Based Cross-Sectional Study
- (2020) Hao Wu et al. Cell Metabolism
- The Genus Alistipes: Gut Bacteria With Emerging Implications to Inflammation, Cancer, and Mental Health
- (2020) Bianca J. Parker et al. Frontiers in Immunology
- Critical Network Structures and Medical Ecology Mechanisms Underlying Human Microbiome-Associated Diseases
- (2020) Zhanshan (Sam) Ma iScience
- Unravelling lactate‐acetate and sugar conversion into butyrate by intestinal Anaerobutyricum and Anaerostipes species by comparative proteogenomics
- (2020) Sudarshan A. Shetty et al. ENVIRONMENTAL MICROBIOLOGY
- A comparative study of the gut microbiome in Egyptian patients with Type I and Type II diabetes
- (2020) Sahar Radwan et al. PLoS One
- The Gut Microbiota and Inflammation: An Overview
- (2020) Zahraa Al Bander et al. International Journal of Environmental Research and Public Health
- Keystone taxa indispensable for microbiome recovery
- (2020) Sean M. Gibbons Nature Microbiology
- Association of gut microbiome with fasting triglycerides, fasting insulin and obesity status in Mexican children
- (2020) Miguel Vazquez‐Moreno et al. Pediatric Obesity
- A theoretical framework for controlling complex microbial communities
- (2019) Marco Tulio Angulo et al. Nature Communications
- Dynamics of Human Gut Microbiota and Short-Chain Fatty Acids in Response to Dietary Interventions with Three Fermentable Fibers
- (2019) Nielson T. Baxter et al. mBio
- Association between blood microbiome and type 2 diabetes mellitus: A nested case-control study
- (2019) Jing Qiu et al. JOURNAL OF CLINICAL LABORATORY ANALYSIS
- Metformin-induced changes of the gut microbiota in healthy young men: results of a non-blinded, one-armed intervention study
- (2019) Thomas Bryrup et al. DIABETOLOGIA
- The pandanus tectorius fruit extract (PTF) modulates the gut microbiota and exerts anti-hyperlipidaemic effects
- (2019) Chongming Wu et al. PHYTOMEDICINE
- Microbiome Multi-Omics Network Analysis: Statistical Considerations, Limitations, and Opportunities
- (2019) Duo Jiang et al. Frontiers in Genetics
- The combination of linagliptin, metformin and lifestyle modification to prevent type 2 diabetes (PRELLIM). A randomized clinical trial
- (2019) Rodolfo Guardado-Mendoza et al. METABOLISM-CLINICAL AND EXPERIMENTAL
- Fatty acid activation and utilization by Alistipes finegoldii , a representative Bacteroidetes resident of the human gut microbiome
- (2019) Christopher D. Radka et al. MOLECULAR MICROBIOLOGY
- Precision Medicine from a Public Health Perspective
- (2018) Ramya Ramaswami et al. Annual Review of Public Health
- Aberrant intestinal microbiota in individuals with prediabetes
- (2018) Kristine H. Allin et al. DIABETOLOGIA
- Human gut microbiome: hopes, threats and promises
- (2018) Patrice D Cani GUT
- EMDUniFrac: exact linear time computation of the UniFrac metric and identification of differentially abundant organisms
- (2018) Jason McClelland et al. JOURNAL OF MATHEMATICAL BIOLOGY
- Regulatory Efficacy of Brown Seaweed Lessonia nigrescens Extract on the Gene Expression Profile and Intestinal Microflora in Type 2 Diabetic Mice
- (2018) Chao Zhao et al. MOLECULAR NUTRITION & FOOD RESEARCH
- Best practices for analysing microbiomes
- (2018) Rob Knight et al. NATURE REVIEWS MICROBIOLOGY
- Anti-diabetic effect of baicalein is associated with the modulation of gut microbiota in streptozotocin and high-fat-diet induced diabetic rats
- (2018) Bowei Zhang et al. Journal of Functional Foods
- Structural Alteration of Gut Microbiota during the Amelioration of Human Type 2 Diabetes with Hyperlipidemia by Metformin and a Traditional Chinese Herbal Formula: a Multicenter, Randomized, Open Label Clinical Trial
- (2018) Xiaolin Tong et al. mBio
- Humans as holobionts: implications for prevention and therapy
- (2018) Maarten van de Guchte et al. Microbiome
- From Diabetes Care to Diabetes Cure—The Integration of Systems Biology, eHealth, and Behavioral Change
- (2018) Ben van Ommen et al. Frontiers in Endocrinology
- Regional variation limits applications of healthy gut microbiome reference ranges and disease models
- (2018) Yan He et al. NATURE MEDICINE
- ‘NetShift’: a methodology for understanding ‘driver microbes’ from healthy and disease microbiome datasets
- (2018) Bhusan K. Kuntal et al. ISME Journal
- Gut microbiome and type 2 diabetes: where we are and where to go?
- (2018) Sapna Sharma et al. JOURNAL OF NUTRITIONAL BIOCHEMISTRY
- Diabesity and mood disorders: Multiple links through the microbiota-gut-brain axis
- (2018) Aitak Farzi et al. MOLECULAR ASPECTS OF MEDICINE
- On Wasserstein Two-Sample Testing and Related Families of Nonparametric Tests
- (2017) Aaditya Ramdas et al. Entropy
- Roseburia spp.: a marker of health?
- (2017) Zohreh Tamanai-Shacoori et al. Future Microbiology
- Enterotypes in the landscape of gut microbial community composition
- (2017) Paul I. Costea et al. Nature Microbiology
- Novel biomarkers for prediabetes, diabetes, and associated complications
- (2017) Brenda Dorcely et al. Diabetes Metabolic Syndrome and Obesity-Targets and Therapy
- Prevotella in the gut: choose carefully
- (2016) Ruth E. Ley Nature Reviews Gastroenterology & Hepatology
- Functional Redundancy-Induced Stability of Gut Microbiota Subjected to Disturbance
- (2016) Andrés Moya et al. TRENDS IN MICROBIOLOGY
- Impact of the gut microbiota on inflammation, obesity, and metabolic disease
- (2016) Claire L. Boulangé et al. Genome Medicine
- Gut Microbiota of Obese, Type 2 Diabetic Individuals is Enriched in Faecalibacterium prausnitzii, Akkermansia muciniphila and Peptostreptococcus anaerobius after Weight Loss
- (2016) Marlene Remely et al. Endocrine Metabolic & Immune Disorders-Drug Targets
- Identification of an anti-inflammatory protein fromFaecalibacterium prausnitzii, a commensal bacterium deficient in Crohn’s disease
- (2015) E Quévrain et al. GUT
- Ecology of bacteria in the human gastrointestinal tract—identification of keystone and foundation taxa
- (2015) Pål Trosvik et al. Microbiome
- Effect of Metformin on Metabolic Improvement and Gut Microbiota
- (2014) Heetae Lee et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- UpSet: Visualization of Intersecting Sets
- (2014) Alexander Lex et al. IEEE TRANSACTIONS ON VISUALIZATION AND COMPUTER GRAPHICS
- Correlation between the human fecal microbiota and depression
- (2014) A. Naseribafrouei et al. NEUROGASTROENTEROLOGY AND MOTILITY
- High-throughput 16S rRNA gene sequencing reveals alterations of intestinal microbiota in myalgic encephalomyelitis/chronic fatigue syndrome patients
- (2013) Marc Frémont et al. ANAEROBE
- Core sediment bacteria drive community response to anthropogenic contamination over multiple environmental gradients
- (2013) Melanie Y. Sun et al. ENVIRONMENTAL MICROBIOLOGY
- phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
- (2013) Paul J. McMurdie et al. PLoS One
- The emerging medical ecology of the human gut microbiome
- (2012) John W. Pepper et al. TRENDS IN ECOLOGY & EVOLUTION
- Inferring Correlation Networks from Genomic Survey Data
- (2012) Jonathan Friedman et al. PLoS Computational Biology
- Interactive metagenomic visualization in a Web browser
- (2011) Brian D Ondov et al. BMC BIOINFORMATICS
- Metagenomic systems biology of the human gut microbiome reveals topological shifts associated with obesity and inflammatory bowel disease
- (2011) S. Greenblum et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Metagenomic biomarker discovery and explanation
- (2011) Nicola Segata et al. GENOME BIOLOGY
- A human gut microbial gene catalogue established by metagenomic sequencing
- (2010) Junjie Qin et al. NATURE
- Microbial community resemblance methods differ in their ability to detect biologically relevant patterns
- (2010) Justin Kuczynski et al. NATURE METHODS
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
- Pathophysiology of prediabetes
- (2009) Muhammad A. Abdul-Ghani et al. Current Diabetes Reports
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