Balancing read length and sequencing depth: Optimizing Nanopore long‐read sequencing for monocots with an emphasis on the Liliales

Modified CTAB protocols for high‐molecular‐weight DNA extractions from ferns

(2023) Pei‐Jun Xie et al.   Applications in Plant Sciences

High‐molecular‐weight DNA extraction for long‐read sequencing of plant genomes: An optimization of standard methods

(2023) Myoungbo Kang et al.   Applications in Plant Sciences

Effective strategies for isolating DNA from members of Asteraceae with high concentrations of secondary metabolites

(2022) Dustin W Bailey et al.   BIOTECHNIQUES

Phylogeography and population genetics reveal ring species patterns in a highly polymorphic California lily

(2022) Adriana I. Hernández et al.   JOURNAL OF BIOGEOGRAPHY

Green plant genomes: What we know in an era of rapidly expanding opportunities

(2022) W. John Kress et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Low-Input High-Molecular-Weight DNA Extraction for Long-Read Sequencing From Plants of Diverse Families

(2022) Alessia Russo et al.   Frontiers in Plant Science

Reference genomes for conservation

(2022) Sadye Paez et al.   SCIENCE

The genetic mechanisms underlying the convergent evolution of pollination syndromes in the Neotropical radiation of Costus L.

(2022) Eugenio Valderrama et al.   Frontiers in Plant Science

Comparative transcriptomics of a monocotyledonous geophyte reveals shared molecular mechanisms of underground storage organ formation

(2021) Carrie M. Tribble et al.   EVOLUTION & DEVELOPMENT

Ultralong Oxford Nanopore Reads Enable the Development of a Reference-Grade Perennial Ryegrass Genome Assembly

(2021) Daniel Frei et al.   Genome Biology and Evolution

High-molecular weight DNA extraction, clean-up and size selection for long-read sequencing

(2021) Ashley Jones et al.   PLoS One

Systematic Comparison of the Performances of De Novo Genome Assemblers for Oxford Nanopore Technology Reads From Piroplasm

(2021) Jinming Wang et al.   Frontiers in Cellular and Infection Microbiology

Nanopore sequencing technology, bioinformatics and applications

(2021) Yunhao Wang et al.   NATURE BIOTECHNOLOGY

A solution to minimum sample size for regressions

(2020) David G. Jenkins et al.   PLoS One

A simple plant high-molecular-weight DNA extraction method suitable for single-molecule technologies

(2020) Zhigang Li et al.   Plant Methods

Unraveling the Spiraling Radiation: A Phylogenomic Analysis of Neotropical Costus L

(2020) Eugenio Valderrama et al.   Frontiers in Plant Science

Improved high-molecular-weight DNA extraction, nanopore sequencing and metagenomic assembly from the human gut microbiome

(2020) Dylan G. Maghini et al.   Nature Protocols

Comparison of long-read methods for sequencing and assembly of a plant genome

(2020) Valentine Murigneux et al.   GigaScience

Highly accurate long-read HiFi sequencing data for five complex genomes

(2020) Ting Hon et al.   Scientific Data

Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome

(2019) Aaron M. Wenger et al.   NATURE BIOTECHNOLOGY

One thousand plant transcriptomes and the phylogenomics of green plants

(2019)   NATURE

The Plant DNA C‐values database (release 7.1): an updated online repository of plant genome size data for comparative studies

(2019) Jaume Pellicer et al.   NEW PHYTOLOGIST

Impact of whole-genome duplication events on diversification rates in angiosperms

(2018) Jacob B. Landis et al.   AMERICAN JOURNAL OF BOTANY

NanoPack: visualizing and processing long-read sequencing data

(2018) Wouter De Coster et al.   BIOINFORMATICS

Nanopore sequencing and assembly of a human genome with ultra-long reads

(2018) Miten Jain et al.   NATURE BIOTECHNOLOGY

Comparison of Some Plant DNA Extraction Methods

(2018) V. A. Scobeyeva et al.   RUSSIAN JOURNAL OF GENETICS

A guide to sequence your favorite plant genomes

(2018) Fay-Wei Li et al.   Applications in Plant Sciences

The value of new genome references

(2017) Kim C. Worley et al.   EXPERIMENTAL CELL RESEARCH

Comparison of three genomic DNA extraction methods to obtain high DNA quality from maize

(2017) Amani Abdel-Latif et al.   Plant Methods

The repetitive landscape of the 5100 Mbp barley genome

(2017) Thomas Wicker et al.   Mobile DNA

Extraction of high-molecular-weight genomic DNA for long-read sequencing of single molecules

(2016) Baptiste Mayjonade et al.   BIOTECHNIQUES

SeqKit: A Cross-Platform and Ultrafast Toolkit for FASTA/Q File Manipulation

(2016) Wei Shen et al.   PLoS One

Analysis of the giant genomes ofFritillaria(Liliaceae) indicates that a lack of DNA removal characterizes extreme expansions in genome size

(2015) Laura J. Kelly et al.   NEW PHYTOLOGIST

A universe of dwarfs and giants: genome size and chromosome evolution in the monocot family Melanthiaceae

(2013) Jaume Pellicer et al.   NEW PHYTOLOGIST

The First 50 Plant Genomes

(2013) Todd P. Michael et al.   Plant Genome

A Method for Extracting High-Quality RNA from Diverse Plants for Next-Generation Sequencing and Gene Expression Analyses

(2013) Roxana Yockteng et al.   Applications in Plant Sciences

Genome evolution: extinction, continuation or explosion?

(2012) JS (Pat) Heslop-Harrison   CURRENT OPINION IN PLANT BIOLOGY

Leaf age affects the quality of DNA extracted from Dimorphandra mollis (Fabaceae), a tropical tree species from the Cerrado region of Brazil

(2011) P.A. Moreira et al.   GENETICS AND MOLECULAR RESEARCH

The Ups and Downs of Genome Size Evolution in Polyploid Species of Nicotiana (Solanaceae)

(2008) I. J. Leitch et al.   ANNALS OF BOTANY