Review
Plant Sciences
Gara Romero-Hernandez, Manuel Martinez
Summary: The success of plant response to environmental stressors depends on regulatory networks and phosphorylation plays a key role in activating or deactivating proteins. Protein kinases are responsible for phosphorylation and play an important role in signal transmission. This review focuses on the contribution of protein kinases to herbivore-triggered responses in plants.
FRONTIERS IN PLANT SCIENCE
(2022)
Review
Plant Sciences
Muhammad-Redha Abdullah-Zawawi, Nisha Govender, Sarahani Harun, Nor Azlan Nor Muhammad, Zamri Zainal, Zeti-Azura Mohamed-Hussein
Summary: Omics technologies are used to understand the complexity of plant systems and components. Integration of multi-omics datasets allows for comprehensive understanding of organism life processes. Open-source datasets and computational tools aid in silico functional prediction of unknown genes, proteins, and metabolites. The systems biology approach involves data collection, modeling, experimentation, and hypothesis generation for validation. Informatics technologies enhance gene function prediction at a minimal cost and effort. This article provides a comprehensive view and resources for gene function prediction in plants.
Editorial Material
Multidisciplinary Sciences
Amber Dance
Summary: Methods that combine imaging with sequencing are revealing the organizational principles of the genome and its impact on cell fates.
Review
Plant Sciences
Megan A. Outram, Melania Figueroa, Jana Sperschneider, Simon J. Williams, Peter N. Dodds
Summary: This article reviews recent advances in understanding host-pathogen co-evolution through the structural determination of effectors and their complexes with immunity receptors. The study highlights the use of recent advances in structural prediction and its role in the future development of designer resistance proteins.
CURRENT OPINION IN PLANT BIOLOGY
(2022)
Article
Plant Sciences
Shalini Dhiman, Kanika Khanna, Pardeep Kumar, Tamanna Bhardwaj, Kamini Devi, Neerja Sharma, Priyanka Sharma, Priya Arora, Nitika Kapoor, Anket Sharma, Renu Bhardwaj
Summary: The rapid growth of industries, human activities, and agricultural materials has led to the release of toxic heavy metals into the environment. Understanding how plants perceive and respond to metal stress is crucial for environmental health, food safety, and agricultural productivity. Research on the molecular mechanisms of plant defense against heavy metal toxicity can provide insights to mitigate pollution and improve plant resistance.
JOURNAL OF PLANT GROWTH REGULATION
(2023)
Review
Plant Sciences
Tiziana M. Sirangelo, Richard A. Ludlow, Natasha D. Spadafora
Summary: This review provides a summary of the molecular resources for cannabis research, focusing on genomics, transcriptomics, and metabolomics approaches. The use of multi-omics methods allows for a better understanding of the relationships between cannabis sub-species and the identification of new metabolites with therapeutic potential. However, further studies are needed to fully elucidate the complex metabolomic matrix of cannabis.
Review
Plant Sciences
Umer Mahmood, Xiaodong Li, Yonghai Fan, Wei Chang, Yue Niu, Jiana Li, Cunmin Qu, Kun Lu
Summary: Crop production is facing challenges from increasing food demand and climate change. Advances in omics techniques and machine learning algorithms can accelerate crop breeding to cope with these challenges. Plant breeding and genetic engineering can develop nutrient sufficient and climate-resilient crops.
FRONTIERS IN PLANT SCIENCE
(2022)
Review
Plant Sciences
Ajila Venkat, Sowbiya Muneer
Summary: Plants use circadian rhythms to cope with environmental changes, synchronize physiological processes, and regulate developmental pathways. Circadian rhythms play a crucial role in plant growth and development.
FRONTIERS IN PLANT SCIENCE
(2022)
Review
Plant Sciences
Takahito Nomura, Yoshiya Seto, Junko Kyozuka
Summary: This article discusses the chemical structure of strigolactone and its latest progress as a plant hormone. It has been found that strigolactones display great variability in root exudates and multiple strigolactones can exist in different plant species. Over 30 strigolactones have been identified, but the chemical structure of the strigolactone that functions as an endogenous hormone in above-ground parts of plants remains unknown. In addition, the article explores the synthetic pathways and regulation of strigolactones, as well as the D14 and KAI2 signaling pathways and the remaining challenges in strigolactone research.
JOURNAL OF EXPERIMENTAL BOTANY
(2023)
Article
Education, Scientific Disciplines
Tingzhe Sun, Zhengjun Zhao
Summary: Teaching the contents of signaling in molecular biology is challenging due to the lack of mechanistic details in textbooks. This study introduces MATLAB simulations to interpret the dynamic mechanisms of key signaling pathways, improving students' learning experience. The use of MATLAB simulations engages students and reinforces their understanding of signaling pathways.
EDUCATION FOR CHEMICAL ENGINEERS
(2023)
Review
Biochemistry & Molecular Biology
Lucas Andre Cavalcanti Brandao, Paola Maura Tricarico, Rossella Gratton, Almerinda Agrelli, Luisa Zupin, Haissam Abou-Saleh, Ronald Moura, Sergio Crovella
Summary: The high volume of information in the omics era has led to a better understanding of pathological processes, but the majority of results are divergent, limiting their applicability. Skin diseases with alterations in the Notch signaling pathway have been extensively studied, yet there are conflicting results.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2021)
Review
Plant Sciences
Bingjian Yuan, Huanzhong Wang
Summary: Plant small peptides, including CLE and EPFL, play crucial roles in cell-cell communication to coordinate developmental processes, especially in vascular development. Different sources of peptides, such as CLE and EPFL, have specific regulatory effects on plant growth and development.
FRONTIERS IN PLANT SCIENCE
(2021)
Review
Biochemistry & Molecular Biology
Alma Armenta-Medina, C. Stewart Gillmor, Peng Gao, Javier Mora-Macias, Leon Kochian, Daoquan Xiang, Raju Datla
Summary: Embryonic development in plants is a crucial phase of reproduction, where cell division and differentiation establish major cell lineages and tissues of the adult plant. Differences in embryo maturation programs between eudicots and monocots reflect the effects of domestication on seed quality traits and adaptation to various environmental conditions. This review highlights the importance of genomics in studying plant embryo development and the diversity in developmental processes among plant species.
PLANT COMMUNICATIONS
(2021)
Article
Biochemistry & Molecular Biology
Cong Li, Mengxi Xu, Xiang Cai, Zhigang Han, Jinping Si, Donghong Chen
Summary: Lipid-derived jasmonates (JAs) play a crucial role in plant development and defense by regulating the balance between growth and defense to adapt to the environment.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2022)
Article
Environmental Sciences
Wei Fan, ChangYing Liu, Boning Cao, Shuyu Ma, Jie Hu, Zhonghuai Xiang, Aichun Zhao
Summary: A meta-analysis of 32 published datasets revealed that plant species played a more decisive role than media used and exposure time in the transcriptome patterns of plant roots response to Cd stress. CD-regulated 838 DEGs were commonly found in at least nine out of 18 GL datasets. Gene ontology, KEGG pathway, and Mapman analyses showed that these DEGs were mainly involved in regulation, cellular response, secondary metabolism, and other related functions.
ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY
(2021)
Article
Green & Sustainable Science & Technology
Zeeshan Ahmad, Shujaul Mulk Khan, Sue E. Page, Heiko Balzter, Abd Ullah, Shahab Ali, Sadia Jehangir, Ujala Ejaz, Rabia Afza, Abdul Razzaq, Akmaral S. Mukhamezhanova
Summary: The phytoremediation ability of selected resistant plant species in the Marble Waste Polluted Ecosystem of northern Pakistan was assessed. The results showed that these indicator plants can effectively accumulate and stabilize potential toxic elements, playing an important role in the cleaning of pollution and environmental sustainability.
JOURNAL OF CLEANER PRODUCTION
(2023)
Review
Food Science & Technology
Bernardo Romao, Raquel Braz Assuncao Botelho, Maria Luiza Torres, Dayanne da Costa Maynard, Maria Eduarda Machado de Holanda, Vinicius Ruela Pereira Borges, Antonio Raposo, Renata Puppin Zandonadi
Summary: Given the high cost of animal-based meats production and the increasing popularity of meatless diets, the demand for plant-based meat substitutes is growing. This study reviews the nutritional composition and ingredients of commercially available meat substitutes worldwide. The results show that meat substitutes generally have lower energy values, higher carbohydrate and dietary fiber content, and varying protein values depending on the substitute category. The primary protein sources are soy, pea, and wheat, while vegetable oils are the primary fat source. Further studies are needed to improve the nutritional composition of meat substitutes and develop sodium-reduced or sodium-free alternatives.
Article
Public, Environmental & Occupational Health
Shahab Ali, Shujaul Mulk Khan, Zeeshan Ahmad, Zafar Siddiq, Abd Ullah, Sunghoon Yoo, Heesup Han, Antonio Raposo
Summary: This study aimed to determine the relationship between carbon sequestration and various factors in different forest types of Pakistan. The results showed that dry temperate conifer forests had the highest carbon sequestration potential, followed by moist temperate mix forests and sub-tropical broad-leaved forests. Factors such as crown area, height, diameter at breast height, and species richness directly and indirectly influenced carbon sequestration, while elevation indirectly influenced carbon sequestration through these factors.
FRONTIERS IN PUBLIC HEALTH
(2023)
Article
Food Science & Technology
Vishu Chaudhary, Priya Katyal, Anil Kumar Puniya, Harsh Panwar, Maninder Arora, Jaspreet Kaur, Namita Rokana, Nitin Wakchaure, Antonio Raposo, Dele Raheem, Anuj Kumar Poonia
Summary: This study successfully produced natural red bio-pigment at a pilot-scale by optimizing fermenter type and bio-pigment extraction parameters. The tray-type fermenter outperformed other types for bio-pigment production. The high yield of bio-pigment was extracted with 60% ethanol at 60°C for 80 min. The study also found three color forms of bio-pigment in the extract, namely red, orange, and yellow. The extracted red bio-pigment exhibited sensitivity to UV, sunlight, and pH > 10, but could withstand high temperature and low concentrations of food preservatives.
EUROPEAN FOOD RESEARCH AND TECHNOLOGY
(2023)
Review
Plant Sciences
Irina Anikina, Aidana Kamarova, Kuralay Issayeva, Saltanat Issakhanova, Nazymgul Mustafayeva, Madina Insebayeva, Akmaral Mukhamedzhanova, Shujaul Mulk Khan, Zeeshan Ahmad, Linda Heejung Lho, Heesup Han, Antonio Raposo
Summary: This review examines methods for controlling plant viral infection, including transgenic varieties and tissue culture. However, the limitations of genetically engineered approaches include short-lived and country-specific resistance. Tissue culture methods also face the issue of self-clonal variations. Increasing plant resistance to viruses can be achieved through in-depth research on plant resistance genes and the mechanisms of inducing protective reactions.
FRONTIERS IN PLANT SCIENCE
(2023)
Article
Green & Sustainable Science & Technology
Shahab Ali, Shujaul Mulk Khan, Zeeshan Ahmad, Abdullah Abdullah, Naeemullah Kazi, Ismat Nawaz, Khalid F. F. Almutairi, Graciela Dolores Avila-Quezada, Elsayed Fathi Abd Allah
Summary: This study collected forest inventory data from 200 forest plots and found that relative humidity, elevation, and Coefficient of Variation of Diameter at breast height (CVD) significantly influence aboveground biomass (AGB) in different forest ecosystems. Relative humidity and soil phosphorus have a positive direct effect on AGB in multi-species forests, while elevation, CVD, and sunlight radiation (SR) negatively affect AGB.
Review
Public, Environmental & Occupational Health
Nurul Aqilah Mohd Zaini, Nur Asyiqin Zahia Azizan, Muhamad Hafiz Abd Rahim, Adi Ainurzaman Jamaludin, Antonio Raposo, Siva Raseetha, Renata Puppin Zandonadi, Mona N. BinMowyna, Dele Raheem, Linda Heejung Lho, Heesup Han, Wan Abd Al Qadr Imad Wan-Mohtar
Summary: Hunger continues to affect generations and hundreds of millions of people worldwide, despite efforts to minimize it. Food waste poses a critical problem in many countries, disrupting the food chain system and negatively impacting the environment.
FRONTIERS IN PUBLIC HEALTH
(2023)
Article
Biology
Md. Shimul Bhuia, Md. Sajjad Hossain Siam, Md. Riat Ahamed, Uttam Kumar Roy, Md. Imran Hossain, Md. Rokonuzzman, Tawhida Islam, Rezoan Sharafat, Mehedi Hasan Bappi, Md. Nayem Mia, Md. Emamuzzaman, Ray Silva de Almeida, Henrique Douglas Melo Coutinho, Antonio Raposo, Hmidan A. Alturki, Muhammad Torequl Islam
Summary: The frequent use of food processing chemical agents can cause damage to our bodies by inducing cytotoxicity, genotoxicity, and mutagenesis. In Bangladesh, formalin, saccharin, and urea are widely used for processing foodstuffs, which has toxic effects on Allium cepa L, a commonly used test model. The study found that all chemical agents demonstrated toxicity in onions in a concentration- and exposure-time-dependent manner, inhibiting root growth and cell division. Precautions should be taken during the industrial and traditional usage of these chemical agents.
Article
Medicine, Research & Experimental
Bruno Anderson Fernandes da Silva, Renata Torres Pessoa, Roger Henrique Sousa da Costa, Maria Rayane Correia de Oliveira, Andreza Guedes Barbosa Ramos, Maria Gabriely de Lima Silva, Lucas Yure Santos da Silva, Cassio Rocha Medeiros, Sloana Giesta Lemos Florencio, Jaime Ribeiro-Filho, Henrique Douglas Melo Coutinho, Antonio Raposo, Sunghoon Yoo, Heesup Han, Irwin Rose Alencar de Menezes, Lucindo Jose Quintans Jr
Summary: This study aimed to evaluate the effects of hydroethanolic barks extract of Ximenia americana (HEXA) on edema and inflammation. The results showed that HEXA has antiedematogenic effects in both acute and chronic inflammation processes, possibly through the suppression or regulation of inflammatory mediators.
BIOMEDICINE & PHARMACOTHERAPY
(2023)
Article
Medicine, Research & Experimental
Isis Caroline da Silva Cirino, Caroline Ferreira de Santana, Maria Jose Ribeiro Bezerra, Igor Vasconcelos Rocha, Ana Carolina de Oliveira Luz, Henrique Douglas Melo Coutinho, Regina Celia Bressan Queiroz de Figueiredo, Antonio Raposo, Linda Heejung Lho, Heesup Han, Tereza Cristina Leal-Balbino
Summary: This study evaluated the antibacterial activity of thymol and carvacrol against multidrug-resistant Acinetobacter baumannii. The results showed that thymol and carvacrol alone effectively inhibited the bacterial growth, and their combination exhibited synergistic or additive effects. Transcriptomic analysis revealed the regulation of stress response pathways.
BIOMEDICINE & PHARMACOTHERAPY
(2023)
Article
Agriculture, Dairy & Animal Science
Raees Khan, Anely Nedelcheva, Sheikh Zain Ul Abidin, Muhammad Zeeshan Bhatti, Shujaul Mulk Khan, Asad Ullah, Rida Fatima Saeed, Abida Aziz, Hadia Gul, Yunus Dogan
Summary: This study explored the plant species used by local communities in Malakand Agency, Pakistan for foraging and ethnoveterinary purposes. A total of 91 forage species from 26 families were documented, along with their ethnoveterinary applications. Local communities commonly use a diverse range of forage species in conjunction with indigenous knowledge of ethnoveterinary uses. These forage species have the potential to overcome the recent fodder shortage.
JOURNAL OF ANIMAL PHYSIOLOGY AND ANIMAL NUTRITION
(2023)
Correction
Biology
Antonio Raposo, Ariana Saraiva, Fernando Ramos, Conrado Carrascosa, Dele Raheem, Rita Barbara, Henrique Silva
Article
Nutrition & Dietetics
Luiza Franco, Eduardo Yoshio Nakano, Antonio Raposo, Hmidan A. Alturki, Sehad N. Alarifi, Claudia Chaves, Edite Teixeira-Lemos, Bernardo Romao
Summary: Celiac disease is an immune-mediated enteropathy triggered by the ingestion of gluten in genetically predisposed individuals, and a gluten-free diet is the only safe treatment. This study aimed to investigate disordered eating attitudes in individuals with CD in Brazil, and found that a considerable proportion of CD patients exhibited such attitudes, particularly in overweight and obese women. Public health policies are necessary to address and treat these attitudes.
Article
Medicine, Research & Experimental
Hossam Kamli, Ahmad Shaikh, Mehedi Hasan Bappi, Antonio Raposo, Md Faruque Ahmad, Fatema Akter Sonia, Md. Showkoth Akbor, Abdullah Al Shamsh Prottay, Sheila Alves Goncalves, Isaac Moura Araujo, Henrique Douglas Melo Coutinho, Ehab Y. Elbendary, Linda Heejung Lho, Heesup Han, Muhammad Torequl Islam
Summary: This study evaluated the effects of sclareol, with or without caffeine and quercetin, using in vivo and in silico studies. The combination of sclareol, caffeine, and quercetin significantly decreased sleep duration and increased sleep onset latency. In addition, these compounds showed stronger interactions with GABAA receptor subunits compared to caffeine, suggesting their potential as antidepressant agents.
BIOMEDICINE & PHARMACOTHERAPY
(2023)