Developmental dynamic transcriptome and systematic analysis reveal the major genes underlying isoflavone accumulation in soybean

Mutations that alter Arabidopsis flavonoid metabolism affect the circadian clock

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Novel QTL and Meta-QTL Mapping for Major Quality Traits in Soybean

(2021) Heng Chen et al.   Frontiers in Plant Science

Systematic analysis of 1,298 RNA‐Seq samples and construction of a comprehensive soybean ( Glycine max ) expression atlas

(2020) Fabricio Brum Machado et al.   PLANT JOURNAL

RNA sequencing: the teenage years

(2019) Rory Stark et al.   NATURE REVIEWS GENETICS

Whole-genome DNA methylation patterns and complex associations with gene expression associated with anthocyanin biosynthesis in apple fruit skin

(2019) Wen-Fang Li et al.   PLANTA

PlantRegMap: charting functional regulatory maps in plants

(2019) Feng Tian et al.   NUCLEIC ACIDS RESEARCH

STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets

(2018) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Salmon provides fast and bias-aware quantification of transcript expression

(2017) Rob Patro et al.   NATURE METHODS

Next maSigPro: updating maSigPro bioconductor package for RNA-seq time series

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clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

(2012) Guangchuang Yu et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Phytozome: a comparative platform for green plant genomics

(2011) David M. Goodstein et al.   NUCLEIC ACIDS RESEARCH

Whole genome co-expression analysis of soybean cytochrome P450 genes identifies nodulation-specific P450 monooxygenases

(2010) Satish K Guttikonda et al.   BMC PLANT BIOLOGY

Weighted Gene Coexpression Network Analysis: State of the Art

(2010) Wei Zhao et al.   Journal of Biopharmaceutical Statistics

Genome sequence of the palaeopolyploid soybean

(2010) Jeremy Schmutz et al.   NATURE

Evaluation of putative reference genes for gene expression normalization in soybean by quantitative real-time RT-PCR

(2009) Ruibo Hu et al.   BMC MOLECULAR BIOLOGY

Changes of Isoflavones during the Growth Cycle ofLupinus albus

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