Standardizing the microbiota of fish used in research

Microbial modulation of behavior and stress responses in zebrafish larvae

(2016) Daniel J. Davis et al.   BEHAVIOURAL BRAIN RESEARCH

Transition from freshwater to seawater reshapes the skin-associated microbiota of Atlantic salmon

(2016) Jep Lokesh et al.   Scientific Reports

Effects of transportation stress and addition of salt to transport water on the skin mucosal homeostasis of rainbow trout (Oncorhynchus mykiss)

(2015) Luca Tacchi et al.   AQUACULTURE

Effects of rearing temperature and dietary short-chain fructooligosaccharides supplementation on allochthonous gut microbiota, digestive enzymes activities and intestine health of turbot (Scophthalmus maximusL.) juveniles

(2015) I. Guerreiro et al.   AQUACULTURE NUTRITION

Effect of dietary components on the gut microbiota of aquatic animals. A never-ending story?

(2015) E. Ringø et al.   AQUACULTURE NUTRITION

The Rebirth of Culture in Microbiology through the Example of Culturomics To Study Human Gut Microbiota

(2015) Jean-Christophe Lagier et al.   CLINICAL MICROBIOLOGY REVIEWS

Maintaining and Monitoring the Defined Microbiota Status of Gnotobiotic Rodents

(2015) Werner Nicklas et al.   ILAR JOURNAL

Analyses of Intestinal Microbiota: Culture versus Sequencing: Figure 1

(2015) Andreas Hiergeist et al.   ILAR JOURNAL

Manipulating the Gut Microbiota: Methods and Challenges: Figure 1

(2015) Aaron C. Ericsson et al.   ILAR JOURNAL

Dietary input of microbes and host genetic variation shape among-population differences in stickleback gut microbiota

(2015) Chris CR Smith et al.   ISME Journal

Addressing the experimental variability associated with the microbiota

(2015) G Eberl   Mucosal Immunology

Quantitative and qualitative analyses of the bacterial microbiota of tilapia (Oreochromis niloticus) cultured in earthen ponds in the Philippines

(2015) Rolando Pakingking et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

The outer mucus layer hosts a distinct intestinal microbial niche

(2015) Hai Li et al.   Nature Communications

Micromanagement in the gut: microenvironmental factors govern colon mucosal biofilm structure and functionality

(2015) Rosemarie De Weirdt et al.   npj Biofilms and Microbiomes

The development of the gut microbiota in rainbow trout (Oncorhynchus mykiss) is affected by first feeding and diet type

(2014) H.-C. Ingerslev et al.   AQUACULTURE

Assessment of Genetic Variability of Fish Personality Traits using Rainbow Trout Isogenic Lines

(2014) Sandie Millot et al.   BEHAVIOR GENETICS

The intestinal microbiome of fish under starvation

(2014) Jun Xia et al.   BMC GENOMICS

High or low dietary carbohydrate:protein ratios during first-feeding affect glucose metabolism and intestinal microbiota in juvenile rainbow trout

(2014) I. Geurden et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Comparative Analysis of the Intestinal Bacterial Communities in Different Species of Carp by Pyrosequencing

(2014) Tongtong Li et al.   MICROBIAL ECOLOGY

Intestinal microbiota in fishes: what's known and what's not

(2014) Kendall D. Clements et al.   MOLECULAR ECOLOGY

Circadian Disorganization Alters Intestinal Microbiota

(2014) Robin M. Voigt et al.   PLoS One

Inter Individual Variations of the Fish Skin Microbiota: Host Genetics Basis of Mutualism?

(2014) Sébastien Boutin et al.   PLoS One

The Colonization Dynamics of the Gut Microbiota in Tilapia Larvae

(2014) Christos Giatsis et al.   PLoS One

Pathogen bacteria adhesion to skin mucus of fishes

(2014) Said Benhamed et al.   VETERINARY MICROBIOLOGY

Individual diet has sex-dependent effects on vertebrate gut microbiota

(2014) Daniel I. Bolnick et al.   Nature Communications

Teleost microbiomes: the state of the art in their characterization, manipulation and importance in aquaculture and fisheries

(2014) Martin S. Llewellyn et al.   Frontiers in Microbiology

Noninvasive analysis of metabolic changes following nutrient input into diverse fish species, as investigated by metabolic and microbial profiling approaches

(2014) Taiga Asakura et al.   PeerJ

Enhancement of growth and intestinal flora in grass carp: The effect of exogenous cellulase

(2013) Yi Zhou et al.   AQUACULTURE

Diversity of the skin microbiota of fishes: evidence for host species specificity

(2013) Andrea Larsen et al.   FEMS MICROBIOLOGY ECOLOGY

Pyrosequencing survey of intestinal microbiota diversity in cultured sea bass (Dicentrarchus labrax) fed functional diets

(2013) Miguel Carda-Diéguez et al.   FEMS MICROBIOLOGY ECOLOGY

International Harmonization of Health Monitoring

(2013) W. Nicklas   ILAR JOURNAL

Fish gut microbiota analysis differentiates physiology and behavior of invasive Asian carp and indigenous American fish

(2013) Lin Ye et al.   ISME Journal

Bacillus cereus var. toyoi promotes growth, affects the histological organization and microbiota of the intestinal mucosa in rainbow trout fingerlings1

(2013) E. Gisbert et al.   JOURNAL OF ANIMAL SCIENCE

Change in food ingestion induces rapid shifts in the diversity of microbiota associated with cutaneous mucus of Atlantic salmonSalmo salar

(2013) A. Landeira-Dabarca et al.   JOURNAL OF FISH BIOLOGY

Effect of Hydrogen Peroxide on Immersion Challenge of Rainbow Trout Fry with Flavobacterium psychrophilum

(2013) Maya Maria Mihályi Henriksen et al.   PLoS One

Network Analysis Highlights Complex Interactions between Pathogen, Host and Commensal Microbiota

(2013) Sébastien Boutin et al.   PLoS One

Host species as a strong determinant of the intestinal microbiota of fish larvae

(2012) Xuemei Li et al.   JOURNAL OF MICROBIOLOGY

Environmental and ecological factors that shape the gut bacterial communities of fish: a meta-analysis

(2012) KAREN E. SULLAM et al.   MOLECULAR ECOLOGY

Murine Gut Microbiota Is Defined by Host Genetics and Modulates Variation of Metabolic Traits

(2012) Autumn M. McKnite et al.   PLoS One

Culturable Gut Microbiota Diversity in Zebrafish

(2012) Leon Cantas et al.   Zebrafish

Bacterial skin flora variation and in vitro inhibitory activity against Saprolegnia parasitica in brown and rainbow trout

(2011) MT Carbajal-González et al.   DISEASES OF AQUATIC ORGANISMS

Genetic difference but functional similarity among fish gut bacterial communities through molecular and biochemical fingerprints

(2011) Maud A. Mouchet et al.   FEMS MICROBIOLOGY ECOLOGY

Evidence for a core gut microbiota in the zebrafish

(2011) Guus Roeselers et al.   ISME Journal

Microflora in fish digestive tract plays significant role in digestion and metabolism

(2011) S. Ganguly et al.   REVIEWS IN FISH BIOLOGY AND FISHERIES

Antagonistic effect of indigenous skin bacteria of brook charr (Salvelinus fontinalis) against Flavobacterium columnare and F. psychrophilum

(2011) Sébastien Boutin et al.   VETERINARY MICROBIOLOGY

Microbial diversity of intestinal contents and mucus in yellow catfish (Pelteobagrus fulvidraco)

(2010) Shangong Wu et al.   AQUACULTURE

Identification of the adherent microbiota on the gills and skin of poly-cultured gibel carp (Carassius auratus gibelio) and bluntnose black bream (Megalobrama amblycephala Yih)

(2010) Wenwen Wang et al.   AQUACULTURE RESEARCH

Microbiota of yellow grouper (Epinephelus awoora Temminck & Schlegel, 1842) fed two different diets

(2010) Jing-Bin Feng et al.   AQUACULTURE RESEARCH

Role of gastrointestinal microbiota in fish

(2010) Sukanta K Nayak   AQUACULTURE RESEARCH

The standardization-generalization dilemma: a way out

(2010) F. Josef van der Staay et al.   GENES BRAIN AND BEHAVIOR

Inbred Strains Should Replace Outbred Stocks in Toxicology, Safety Testing, and Drug Development

(2010) Michael F. W. Festing   TOXICOLOGIC PATHOLOGY

Improving Bioscience Research Reporting: The ARRIVE Guidelines for Reporting Animal Research

(2010) Carol Kilkenny et al.   PLOS BIOLOGY

Lactic acid bacteria vs. pathogens in the gastrointestinal tract of fish: a review

(2009) Einar Ringø et al.   AQUACULTURE RESEARCH

Early treatment with Lactobacillus delbrueckii strain induces an increase in intestinal T-cells and granulocytes and modulates immune-related genes of larval Dicentrarchus labrax (L.)

(2009) Simona Picchietti et al.   FISH & SHELLFISH IMMUNOLOGY

Soybean meal alters autochthonous microbial populations, microvilli morphology and compromises intestinal enterocyte integrity of rainbow trout,Oncorhynchus mykiss(Walbaum)

(2009) D L Merrifield et al.   JOURNAL OF FISH DISEASES

Environmental standardization: cure or cause of poor reproducibility in animal experiments?

(2009) S Helene Richter et al.   NATURE METHODS

A review on the interactions between gut microbiota and innate immunity of fish: Table 1

(2008) Geovanny D. Gómez et al.   FEMS IMMUNOLOGY AND MEDICAL MICROBIOLOGY

Methods for generating and colonizing gnotobiotic zebrafish

(2008) Linh N Pham et al.   Nature Protocols

Determination of fish origin by using 16S rDNA fingerprinting of bacterial communities by PCR-DGGE: An application on Pangasius fish from Viet Nam

(2007) Doan Duy Le Nguyen et al.   FOOD CONTROL