Global Transcriptome Analysis of Primary Cerebrocortical Cells: Identification of Genes Regulated by Triiodothyronine in Specific Cell Types

A temporary compendium of thyroid hormone target genes in brain

(2015) F. Chatonnet et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Thyroid Hormone and Astroglia: Endocrine Control of the Neural Environment

(2015) R. S. Dezonne et al.   JOURNAL OF NEUROENDOCRINOLOGY

Thyroid hormone transporters—functions and clinical implications

(2015) Juan Bernal et al.   Nature Reviews Endocrinology

Development, evolution and pathology of neocortical subplate neurons

(2015) Anna Hoerder-Suabedissen et al.   NATURE REVIEWS NEUROSCIENCE

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Transient Maternal Hypothyroxinemia Potentiates the Transcriptional Response to Exogenous Thyroid Hormone in the Fetal Cerebral Cortex Before the Onset of Fetal Thyroid Function: A Messenger and MicroRNA Profiling Study

(2014) Hongyan Dong et al.   CEREBRAL CORTEX

MYC proteins promote neuronal differentiation by controlling the mode of progenitor cell division

(2014) N. Zinin et al.   EMBO REPORTS

Thyroid hormone receptors and resistance to thyroid hormone disorders

(2014) Tânia M. Ortiga-Carvalho et al.   Nature Reviews Endocrinology

Thyroid Hormone Regulation of Gene Expression in Primary Cerebrocortical Cells: Role of Thyroid Hormone Receptor Subtypes and Interactions with Retinoic Acid and Glucocorticoids

(2014) Pilar Gil-Ibáñez et al.   PLoS One

Sonic hedgehog signaling in the postnatal brain

(2014) Arturo Álvarez-Buylla et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

An Evo-Devo Approach to Thyroid Hormones in Cerebral and Cerebellar Cortical Development: Etiological Implications for Autism

(2014) Pere Berbel et al.   Frontiers in Endocrinology

Role of Thyroid Hormone Receptor Subtypes α and β on Gene Expression in the Cerebral Cortex and Striatum of Postnatal Mice

(2013) Pilar Gil-Ibañez et al.   ENDOCRINOLOGY

mRNA expression, splicing and editing in the embryonic and adult mouse cerebral cortex

(2013) Allissa A Dillman et al.   NATURE NEUROSCIENCE

Genome-wide analysis of thyroid hormone receptors shared and specific functions in neural cells

(2013) F. Chatonnet et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Expression profiling of mouse subplate reveals a dynamic gene network and disease association with autism and schizophrenia

(2013) Anna Hoerder-Suabedissen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Qualimap: evaluating next-generation sequencing alignment data

(2012) Fernando García-Alcalde et al.   BIOINFORMATICS

Mechanisms of thyroid hormone action

(2012) Gregory A. Brent   JOURNAL OF CLINICAL INVESTIGATION

Suppression of a MEF2-KLF6 Survival Pathway by PKA Signaling Promotes Apoptosis in Embryonic Hippocampal Neurons

(2012) J. Salma et al.   JOURNAL OF NEUROSCIENCE

The T3-induced gene KLF9 regulates oligodendrocyte differentiation and myelin regeneration

(2012) Jason C. Dugas et al.   MOLECULAR AND CELLULAR NEUROSCIENCE

Thyroid hormone triggers the developmental loss of axonal regenerative capacity via thyroid hormone receptor  1 and kruppel-like factor 9 in Purkinje cells

(2012) H. X. Avci et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Thyroid Hormone Regulates the Expression of the Sonic Hedgehog Signaling Pathway in the Embryonic and Adult Mammalian Brain

(2011) Lynette A. Desouza et al.   ENDOCRINOLOGY

Hedgehog-mediated regulation of thyroid hormone action through iodothyronine deiodinases

(2011) Monica Dentice   EXPERT OPINION ON THERAPEUTIC TARGETS

Cellular DBP and E4BP4 proteins are critical for determining the period length of the circadian oscillator

(2011) Daisuke Yamajuku et al.   FEBS LETTERS

Differential expression in RNA-seq: A matter of depth

(2011) S. Tarazona et al.   GENOME RESEARCH

NR4A Gene Expression Is Dynamically Regulated in the Ventral Tegmental Area Dopamine Neurons and Is Related to Expression of Dopamine Neurotransmission Genes

(2011) Jeffrey B. Eells et al.   JOURNAL OF MOLECULAR NEUROSCIENCE

A Mutation in the Thyroid Hormone Receptor Alpha Gene

(2011) Elena Bochukova et al.   NEW ENGLAND JOURNAL OF MEDICINE

Thyroid Hormone-Regulated Mouse Cerebral Cortex Genes Are Differentially Dependent on the Source of the Hormone: A Study in Monocarboxylate Transporter-8- and Deiodinase-2-Deficient Mice

(2010) Beatriz Morte et al.   ENDOCRINOLOGY

Thyroid Hormone Regulation of Gene Expression in the Developing Rat Fetal Cerebral Cortex: Prominent Role of the Ca2+/Calmodulin-Dependent Protein Kinase IV Pathway

(2010) Beatriz Morte et al.   ENDOCRINOLOGY

TOX3 is a neuronal survival factor that induces transcription depending on the presence of CITED1 or phosphorylated CREB in the transcriptionally active complex

(2010) S. Dittmer et al.   JOURNAL OF CELL SCIENCE

The Thyroid Hormone Receptor α1 Protein Is Expressed in Embryonic Postmitotic Neurons and Persists in Most Adult Neurons

(2010) Karin Wallis et al.   MOLECULAR ENDOCRINOLOGY

Thyroid hormone exerts negative feedback on hypothalamic type 4 melanocortin receptor expression

(2010) S. Decherf et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Zbtb20 is essential for the specification of CA1 field identity in the developing hippocampus

(2010) Z. Xie et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Identification of a Thyroid Hormone Response Element in the Mouse Krüppel-Like Factor 9 Gene to Explain Its Postnatal Expression in the Brain

(2009) Robert J. Denver et al.   ENDOCRINOLOGY

Emx1-Lineage Progenitors Differentially Contribute to Neural Diversity in the Striatum and Amygdala

(2009) L. A. Cocas et al.   JOURNAL OF NEUROSCIENCE

Kruppel-Like Factor 9 Is Necessary for Late-Phase Neuronal Maturation in the Developing Dentate Gyrus and during Adult Hippocampal Neurogenesis

(2009) K. N. Scobie et al.   JOURNAL OF NEUROSCIENCE

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Application of a Translational Profiling Approach for the Comparative Analysis of CNS Cell Types

(2008) Joseph P. Doyle et al.   CELL

Locomotor Deficiencies and Aberrant Development of Subtype-Specific GABAergic Interneurons Caused by an Unliganded Thyroid Hormone Receptor  1

(2008) K. Wallis et al.   JOURNAL OF NEUROSCIENCE

A Transcriptome Database for Astrocytes, Neurons, and Oligodendrocytes: A New Resource for Understanding Brain Development and Function

(2008) J. D. Cahoy et al.   JOURNAL OF NEUROSCIENCE

Bhlhb5 Regulates the Postmitotic Acquisition of Area Identities in Layers II-V of the Developing Neocortex

(2008) Pushkar S. Joshi et al.   NEURON

Satb2 Is a Postmitotic Determinant for Upper-Layer Neuron Specification in the Neocortex

(2008) Olga Britanova et al.   NEURON