The plant response to high CO2 levels is heritable and orchestrated by DNA methylation

Epigenetic regulation of thermomorphogenesis and heat stress tolerance

(2022) Giorgio Perrella et al.   NEW PHYTOLOGIST

Activating stress memory: eustressors as potential tools for plant breeding

(2022) A. L. Villagómez-Aranda et al.   PLANT CELL REPORTS

Transgenerational effects of elevated CO2 on rice photosynthesis and grain yield

(2022) Chunhua Lv et al.   PLANT MOLECULAR BIOLOGY

Divergent evolutionary trajectories of bryophytes and tracheophytes from a complex common ancestor of land plants

(2022) Brogan J. Harris et al.   Nature Ecology & Evolution

Aphid feeding induces the relaxation of epigenetic control and the associated regulation of the defense response in Arabidopsis

(2021) Maria Luz Annacondia et al.   NEW PHYTOLOGIST

How to Switch from Mitosis to Meiosis: Regulation of Germline Entry in Plants

(2021) Franziska Böwer et al.   Annual Review of Genetics

Response of rice growth and leaf physiology to elevated CO2 concentrations: A meta-analysis of 20-year FACE studies

(2021) Shaowu Hu et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Priming crops for the future: rewiring stress memory

(2021) Haipei Liu et al.   TRENDS IN PLANT SCIENCE

Chromatin regulation of somatic abiotic stress memory

(2020) Isabel Bäurle et al.   JOURNAL OF EXPERIMENTAL BOTANY

FORGETTER2 protein phosphatase and phospholipase D modulate heat stress memory in Arabidopsis

(2020) Reynel Urrea Castellanos et al.   PLANT JOURNAL

RCP8.5 tracks cumulative CO2 emissions

(2020) Christopher R. Schwalm et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The methylome is altered for plants in a high CO 2 world: Insights into the response of a wild plant population to multigenerational exposure to elevated atmospheric [CO 2 ]

(2020) Jasmine M. Saban et al.   GLOBAL CHANGE BIOLOGY

Efficient and accurate determination of genome-wide DNA methylation patterns in Arabidopsis thaliana with enzymatic methyl sequencing

(2020) Suhua Feng et al.   Epigenetics & Chromatin

RNA-directed DNA Methylation

(2020) Robert M. Erdmann et al.   PLoS Genetics

OUP accepted manuscript

(2018)   BIOINFORMATICS

Dynamics and function of DNA methylation in plants

(2018) Huiming Zhang et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

DDM1 guards against telomere truncation in Arabidopsis

(2018) Xiaoyuan Xie et al.   PLANT CELL REPORTS

Raspberry Pi-powered imaging for plant phenotyping

(2018) Jose C. Tovar et al.   Applications in Plant Sciences

Effect of the transgenerational exposure to elevated CO 2 on the drought response of winter wheat: Stomatal control and water use efficiency

(2017) Yafei Li et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

DDM1 and Lsh remodelers allow methylation of DNA wrapped in nucleosomes

(2017) David B Lyons et al.   eLife

PlantCV v2: Image analysis software for high-throughput plant phenotyping

(2017) Malia A. Gehan et al.   PeerJ

Crop responses to elevated CO2 and interactions with H2O, N, and temperature

(2016) Bruce A Kimball   CURRENT OPINION IN PLANT BIOLOGY

Effects of high CO2 levels on dynamic photosynthesis: carbon gain, mechanisms, and environmental interactions

(2016) Hajime Tomimatsu et al.   JOURNAL OF PLANT RESEARCH

deepTools2: a next generation web server for deep-sequencing data analysis

(2016) Fidel Ramírez et al.   NUCLEIC ACIDS RESEARCH

Hyperosmotic stress memory in Arabidopsis is mediated by distinct epigenetically labile sites in the genome and is restricted in the male germline by DNA glycosylase activity

(2016) Anjar Wibowo et al.   eLife

A Versatile Phenotyping System and Analytics Platform Reveals Diverse Temporal Responses to Water Availability in Setaria

(2015) Noah Fahlgren et al.   Molecular Plant

Human body epigenome maps reveal noncanonical DNA methylation variation

(2015) Matthew D. Schultz et al.   NATURE

DNA methylation pathways and their crosstalk with histone methylation

(2015) Jiamu Du et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Epigenetic events in plant male germ cell heat stress responses

(2015) Yuanyuan Chen et al.   Plant Reproduction

Transgenerational Epigenetic Inheritance: Myths and Mechanisms

(2014) Edith Heard et al.   CELL

The Functional Topography of the Arabidopsis Genome Is Organized in a Reduced Number of Linear Motifs of Chromatin States

(2014) J. Sequeira-Mendes et al.   PLANT CELL

Mutation of a major CG methylase in rice causes genome-wide hypomethylation, dysregulated genome expression, and seedling lethality

(2014) L. Hu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Epigenetic Regulation in Plant Responses to the Environment

(2014) D. C. Baulcombe et al.   Cold Spring Harbor Perspectives in Biology

The Arabidopsis Nucleosome Remodeler DDM1 Allows DNA Methyltransferases to Access H1-Containing Heterochromatin

(2013) Assaf Zemach et al.   CELL

Comprehensive Analysis of Silencing Mutants Reveals Complex Regulation of the Arabidopsis Methylome

(2013) Hume Stroud et al.   CELL

Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis

(2013) Hume Stroud et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Multiple exposures to drought 'train' transcriptional responses in Arabidopsis

(2012) Yong Ding et al.   Nature Communications

Gene Expression and Stress Response Mediated by the Epigenetic Regulation of a Transposable Element Small RNA

(2012) Andrea D. McCue et al.   PLoS Genetics

An experimental method to facilitate the identification of hybrid sporophytes in the moss Physcomitrella patens using fluorescent tagged lines

(2011) Pierre-François Perroud et al.   NEW PHYTOLOGIST

Accurate inference of shoot biomass from high-throughput images of cereal plants

(2011) Mahmood R Golzarian et al.   Plant Methods

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Selective epigenetic control of retrotransposition in Arabidopsis

(2009) Marie Mirouze et al.   NATURE

A stepwise pathway for biogenesis of 24-nt secondary siRNAs and spreading of DNA methylation

(2008) Lucia Daxinger et al.   EMBO JOURNAL

Transgenerational effects of global environmental change: long-term CO2 and nitrogen treatments influence offspring growth response to elevated CO2

(2008) Jennifer A. Lau et al.   OECOLOGIA

Roles of RNA polymerase IV in gene silencing

(2008) Craig S. Pikaard et al.   TRENDS IN PLANT SCIENCE