Correlative metabologenomics of 110 fungi reveals metabolite–gene cluster pairs
Published 2023 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Correlative metabologenomics of 110 fungi reveals metabolite–gene cluster pairs
Authors
Keywords
-
Journal
Nature Chemical Biology
Volume -, Issue -, Pages -
Publisher
Springer Science and Business Media LLC
Online
2023-03-07
DOI
10.1038/s41589-023-01276-8
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Fungal–fungal co-culture: a primer for generating chemical diversity
- (2022) Sonja L. Knowles et al. NATURAL PRODUCT REPORTS
- BiG-SLiCE: A highly scalable tool maps the diversity of 1.2 million biosynthetic gene clusters
- (2021) Satria A Kautsar et al. GigaScience
- A community resource for paired genomic and metabolomic data mining
- (2021) Michelle A. Schorn et al. Nature Chemical Biology
- Opportunities and Limitations for Assigning Relative Configurations of Antibacterial Bislactones using GIAO NMR Shift Calculations
- (2021) Sonja L. Knowles et al. JOURNAL OF NATURAL PRODUCTS
- antiSMASH 6.0: improving cluster detection and comparison capabilities
- (2021) Kai Blin et al. NUCLEIC ACIDS RESEARCH
- An interpreted atlas of biosynthetic gene clusters from 1,000 fungal genomes
- (2021) Matthew T. Robey et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Ranking microbial metabolomic and genomic links in the NPLinker framework using complementary scoring functions
- (2021) Grímur Hjörleifsson Eldjárn et al. PLoS Computational Biology
- CFM-ID 4.0: More Accurate ESI-MS/MS Spectral Prediction and Compound Identification
- (2021) Fei Wang et al. ANALYTICAL CHEMISTRY
- Media and strain studies for the scaled production of cis-enone resorcylic acid lactones as feedstocks for semisynthesis
- (2021) Zeinab Y. Al Subeh et al. JOURNAL OF ANTIBIOTICS
- Mining Indonesian Microbial Biodiversity for Novel Natural Compounds by a Combined Genome Mining and Molecular Networking Approach
- (2021) Ira Handayani et al. Marine Drugs
- Microevolution in the pansecondary metabolome of Aspergillus flavus and its potential macroevolutionary implications for filamentous fungi
- (2021) Milton T. Drott et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Toxicological and Medical Aspects of Aspergillus-Derived Mycotoxins Entering the Feed and Food Chain
- (2020) Zsolt Ráduly et al. Frontiers in Microbiology
- Comparative Genomics and Metabolomics in the Genus Nocardia
- (2020) Daniel Männle et al. mSystems
- Cytotoxic Naphthoquinone Analogues, Including Heterodimers, and Their Structure Elucidation Using LR-HSQMBC NMR Experiments
- (2020) Laura Flores-Bocanegra et al. JOURNAL OF NATURAL PRODUCTS
- BiG-FAM: the biosynthetic gene cluster families database
- (2020) Satria A Kautsar et al. NUCLEIC ACIDS RESEARCH
- The amazing potential of fungi: 50 ways we can exploit fungi industrially
- (2019) Kevin D. Hyde et al. FUNGAL DIVERSITY
- A Metabolome- and Metagenome-Wide Association Network Reveals Microbial Natural Products and Microbial Biotransformation Products from the Human Microbiota
- (2019) Liu Cao et al. mSystems
- A computational framework to explore large-scale biosynthetic diversity
- (2019) Jorge C. Navarro-Muñoz et al. Nature Chemical Biology
- The Natural Products Atlas: An Open Access Knowledge Base for Microbial Natural Products Discovery
- (2019) Jeffrey A. van Santen et al. ACS Central Science
- Discovery of the Biosynthetic Machinery for Stravidins, Biotin Antimetabolites
- (2019) Rana Montaser et al. ACS Chemical Biology
- DeepRiPP integrates multiomics data to automate discovery of novel ribosomally synthesized natural products
- (2019) Nishanth J. Merwin et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- MetaMiner: A Scalable Peptidogenomics Approach for Discovery of Ribosomal Peptide Natural Products with Blind Modifications from Microbial Communities
- (2019) Liu Cao et al. Cell Systems
- Identification of the Biosynthetic Gene Cluster for Himeic Acid A: A Ubiquitin-Activating Enzyme (E1) Inhibitor in Aspergillus japonicus MF275
- (2018) Makoto Hashimoto et al. CHEMBIOCHEM
- HMMER web server: 2018 update
- (2018) Simon C Potter et al. NUCLEIC ACIDS RESEARCH
- Deletion of the epigenetic regulator GcnE in Aspergillus niger FGSC A1279 activates the production of multiple polyketide metabolites
- (2018) Bin Wang et al. MICROBIOLOGICAL RESEARCH
- Fungal secondary metabolism: regulation, function and drug discovery
- (2018) Nancy P. Keller NATURE REVIEWS MICROBIOLOGY
- Gene-guided discovery and engineering of branched cyclic peptides in plants
- (2018) Roland D. Kersten et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Enhanced dereplication of fungal cultures via use of mass defect filtering
- (2017) Noemi D Paguigan et al. JOURNAL OF ANTIBIOTICS
- Natural products for human health: an historical overview of the drug discovery approaches
- (2017) S. Bernardini et al. NATURAL PRODUCT RESEARCH
- Global analysis of biosynthetic gene clusters reveals vast potential of secondary metabolite production in Penicillium species
- (2017) Jens Christian Nielsen et al. Nature Microbiology
- Aspernigrins with anti-HIV-1 activities from the marine-derived fungus Aspergillus niger SCSIO Jcsw6F30
- (2016) Xuefeng Zhou et al. BIOORGANIC & MEDICINAL CHEMISTRY LETTERS
- Comprehensive curation and analysis of fungal biosynthetic gene clusters of published natural products
- (2016) Yong Fuga Li et al. FUNGAL GENETICS AND BIOLOGY
- Penipyridones A–F, Pyridone Alkaloids from Penicillium funiculosum
- (2016) Haibo Zhou et al. JOURNAL OF NATURAL PRODUCTS
- Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking
- (2016) Mingxun Wang et al. NATURE BIOTECHNOLOGY
- Metabologenomics: Correlation of Microbial Gene Clusters with Metabolites Drives Discovery of a Nonribosomal Peptide with an Unusual Amino Acid Monomer
- (2016) Anthony W. Goering et al. ACS Central Science
- An Integrated Metabolomic and Genomic Mining Workflow To Uncover the Biosynthetic Potential of Bacteria
- (2016) Maria Maansson et al. mSystems
- Large-Scale Metabolomics Reveals a Complex Response of Aspergillus nidulans to Epigenetic Perturbation
- (2015) Jessica C. Albright et al. ACS Chemical Biology
- Fungal artificial chromosomes for mining of the fungal secondary metabolome
- (2015) Jin Woo Bok et al. BMC GENOMICS
- Molecular Networking and Pattern-Based Genome Mining Improves Discovery of Biosynthetic Gene Clusters and their Products from Salinispora Species
- (2015) Katherine R. Duncan et al. CHEMISTRY & BIOLOGY
- Minimum Information about a Biosynthetic Gene cluster
- (2015) Marnix H Medema et al. Nature Chemical Biology
- GenBank
- (2015) Karen Clark et al. NUCLEIC ACIDS RESEARCH
- An automated Genomes-to-Natural Products platform (GNP) for the discovery of modular natural products
- (2015) Chad W. Johnston et al. Nature Communications
- NRPquest: Coupling Mass Spectrometry and Genome Mining for Nonribosomal Peptide Discovery
- (2014) Hosein Mohimani et al. JOURNAL OF NATURAL PRODUCTS
- A roadmap for natural product discovery based on large-scale genomics and metabolomics
- (2014) James R Doroghazi et al. Nature Chemical Biology
- High-Resolution MS, MS/MS, and UV Database of Fungal Secondary Metabolites as a Dereplication Protocol for Bioactive Natural Products
- (2013) Tamam El-Elimat et al. JOURNAL OF NATURAL PRODUCTS
- The genome portal of the Department of Energy Joint Genome Institute: 2014 updates
- (2013) Henrik Nordberg et al. NUCLEIC ACIDS RESEARCH
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- A cross-platform toolkit for mass spectrometry and proteomics
- (2012) Matthew C Chambers et al. NATURE BIOTECHNOLOGY
- MZmine 2: Modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data
- (2010) Tomáš Pluskal et al. BMC BIOINFORMATICS
- Characterization of a polyketide synthase in Aspergillus niger whose product is a precursor for both dihydroxynaphthalene (DHN) melanin and naphtho-γ-pyrone
- (2010) Yi-Ming Chiang et al. FUNGAL GENETICS AND BIOLOGY
- Pestalazines and Pestalamides, Bioactive Metabolites from the Plant Pathogenic FungusPestalotiopsis theae
- (2008) Gang Ding et al. JOURNAL OF NATURAL PRODUCTS
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreDiscover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversation