Quantitative profiling of pseudouridylation landscape in the human transcriptome

Pseudouridine synthases modify human pre-mRNA co-transcriptionally and affect pre-mRNA processing

(2022) Nicole M. Martinez et al.   MOLECULAR CELL

Pseudouridine-modified tRNA fragments repress aberrant protein synthesis and predict leukaemic progression in myelodysplastic syndrome

(2022) Nicola Guzzi et al.   NATURE CELL BIOLOGY

Decoding pseudouridine: an emerging target for therapeutic development

(2022) Jonas Cerneckis et al.   TRENDS IN PHARMACOLOGICAL SCIENCES

Quantitative sequencing using BID-seq uncovers abundant pseudouridines in mammalian mRNA at base resolution

(2022) Qing Dai et al.   NATURE BIOTECHNOLOGY

CRISPR-free, programmable RNA pseudouridylation to suppress premature termination codons

(2022) Jinghui Song et al.   MOLECULAR CELL

Quantitative profiling of pseudouridylation dynamics in native RNAs with nanopore sequencing

(2021) Oguzhan Begik et al.   NATURE BIOTECHNOLOGY

Modifications in an Emergency: The Role of N1-Methylpseudouridine in COVID-19 Vaccines

(2021) Kellie D. Nance et al.   ACS Central Science

Systematic calibration of epitranscriptomic maps using a synthetic modification-free RNA library

(2021) Zhang Zhang et al.   NATURE METHODS

MODOMICS: a database of RNA modification pathways. 2021 update

(2021) Pietro Boccaletto et al.   NUCLEIC ACIDS RESEARCH

Single-cell RNA counting at allele and isoform resolution using Smart-seq3

(2020) Michael Hagemann-Jensen et al.   NATURE BIOTECHNOLOGY

Regulation and Function of RNA Pseudouridylation in Human Cells

(2020) Erin K. Borchardt et al.   Annual Review of Genetics

The tRNA pseudouridine synthase TruB1 regulates the maturation of let‐7 miRNA

(2020) Ryota Kurimoto et al.   EMBO JOURNAL

HydraPsiSeq: a method for systematic and quantitative mapping of pseudouridines in RNA

(2020) Virginie Marchand et al.   NUCLEIC ACIDS RESEARCH

Complete chemical structures of human mitochondrial tRNAs

(2020) Takeo Suzuki et al.   Nature Communications

Transcriptome-wide profiling of multiple RNA modifications simultaneously at single-base resolution

(2019) Vahid Khoddami et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-wide identification of mRNA 5-methylcytosine in mammals

(2019) Tao Huang et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

(2019) Daehwan Kim et al.   NATURE BIOTECHNOLOGY

Differential roles of human PUS10 in miRNA processing and tRNA pseudouridylation

(2019) Jinghui Song et al.   Nature Chemical Biology

Pseudouridylation of tRNA-Derived Fragments Steers Translational Control in Stem Cells

(2018) Nicola Guzzi et al.   CELL

N 6 -Methyladenosines Modulate A-to-I RNA Editing

(2018) Jian-Feng Xiang et al.   MOLECULAR CELL

Landscape of the complete RNA chemical modifications in the human 80S ribosome

(2018) Masato Taoka et al.   NUCLEIC ACIDS RESEARCH

An Elongation- and Ligation-Based qPCR Amplification Method for the Radiolabeling-Free Detection of Locus-Specific N 6 -Methyladenosine Modification

(2018) Yu Xiao et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

TRUB1 is the predominant pseudouridine synthase acting on mammalian mRNA via a predictable and conserved code

(2017) Modi Safra et al.   GENOME RESEARCH

Base-Resolution Mapping Reveals Distinct m 1 A Methylome in Nuclear- and Mitochondrial-Encoded Transcripts

(2017) Xiaoyu Li et al.   MOLECULAR CELL

Pseudouridine: the fifth RNA nucleotide with renewed interests

(2016) Xiaoyu Li et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

A pseudouridine synthase module is essential for mitochondrial protein synthesis and cell viability

(2016) Hana Antonicka et al.   EMBO REPORTS

Pseudouridylation meets next-generation sequencing

(2016) Maryam Zaringhalam et al.   METHODS

Chemical pulldown reveals dynamic pseudouridylation of the mammalian transcriptome

(2015) Xiaoyu Li et al.   Nature Chemical Biology

Transcriptome-wide identification of adenosine-to-inosine editing using the ICE-seq method

(2015) Tsutomu Suzuki et al.   Nature Protocols

Transcriptome-wide Mapping Reveals Widespread Dynamic-Regulated Pseudouridylation of ncRNA and mRNA

(2014) Schraga Schwartz et al.   CELL

Pseudouridine profiling reveals regulated mRNA pseudouridylation in yeast and human cells

(2014) Thomas M. Carlile et al.   NATURE

Transcriptome-Wide Mapping of Pseudouridines: Pseudouridine Synthases Modify Specific mRNAs in S. cerevisiae

(2014) Alexander F. Lovejoy et al.   PLoS One

Multiplex Genome Engineering Using CRISPR/Cas Systems

(2013) L. Cong et al.   SCIENCE

Converting nonsense codons into sense codons by targeted pseudouridylation

(2011) John Karijolich et al.   NATURE