Sample Preparation Methods for Targeted Single-Cell Proteomics

Ultra‐high sensitivity mass spectrometry quantifies single‐cell proteome changes upon perturbation

(2022) Andreas‐David Brunner et al.   Molecular Systems Biology

Capillary Electrophoresis Mass Spectrometry for Scalable Single-Cell Proteomics

(2022) Bowen Shen et al.   Frontiers in Chemistry

MicroPOTS Analysis of Barrett’s Esophageal Cell Line Models Identifies Proteomic Changes after Physiologic and Radiation Stress

(2021) Kenneth Weke et al.   JOURNAL OF PROTEOME RESEARCH

Comparison of Unit Resolution Versus High-Resolution Accurate Mass for Parallel Reaction Monitoring

(2021) Lilian R. Heil et al.   JOURNAL OF PROTEOME RESEARCH

Multiplexed single-cell proteomics using SCoPE2

(2021) Aleksandra A. Petelski et al.   Nature Protocols

High-throughput and high-efficiency sample preparation for single-cell proteomics using a nested nanowell chip

(2021) Jongmin Woo et al.   Nature Communications

Concentration Determination of >200 Proteins in Dried Blood Spots for Biomarker Discovery and Validation

(2020) Azad Eshghi et al.   MOLECULAR & CELLULAR PROTEOMICS

Generating high quality libraries for DIA MS with empirically corrected peptide predictions

(2020) Brian C. Searle et al.   Nature Communications

Fully Automated Sample Processing and Analysis Workflow for Low-Input Proteome Profiling

(2020) Yiran Liang et al.   ANALYTICAL CHEMISTRY

Streamlined protocol for deep proteomic profiling of FAC-sorted cells and its application to freshly isolated murine immune cells

(2019) Samuel A Myers et al.   MOLECULAR & CELLULAR PROTEOMICS

Single‐Cell Detection and Photostimulation on a Microfluidic Chip Aided with Gold Nanorods

(2019) Yujie Zhu et al.   CYTOMETRY PART A

High-Throughput Single Cell Proteomics Enabled by Multiplex Isobaric Labeling in a Nanodroplet Sample Preparation Platform

(2019) Maowei Dou et al.   ANALYTICAL CHEMISTRY

Interfacial Nanoinjection‐Based Nanoliter Single‐Cell Analysis

(2019) Juanli Yun et al.   Small

Structural analysis of glycated human hemoglobin using native mass spectrometry

(2019) Monita Muralidharan et al.   FEBS Journal

Single-cell proteomics reveals changes in expression during hair-cell development

(2019) Ying Zhu et al.   eLife

Proteomic Analysis of Single Mammalian Cells Enabled by Microfluidic Nanodroplet Sample Preparation and Ultrasensitive NanoLC-MS

(2018) Ying Zhu et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Panorama Public: A Public Repository for Quantitative Data Sets Processed in Skyline

(2018) Vagisha Sharma et al.   MOLECULAR & CELLULAR PROTEOMICS

Nanodroplet processing platform for deep and quantitative proteome profiling of 10–100 mammalian cells

(2018) Ying Zhu et al.   Nature Communications

Evaluation and optimization of reduction and alkylation methods to maximize peptide identification with MS-based proteomics

(2017) Suttipong Suttapitugsakul et al.   Molecular BioSystems

MSFragger: ultrafast and comprehensive peptide identification in mass spectrometry–based proteomics

(2017) Andy T Kong et al.   NATURE METHODS

Set of Novel Automated Quantitative Microproteomics Protocols for Small Sample Amounts and Its Application to Kidney Tissue Substructures

(2016) Erik Leonardus de Graaf et al.   JOURNAL OF PROTEOME RESEARCH

Targeted quantification of N-1-(carboxymethyl) valine and N-1-(carboxyethyl) valine peptides of β-hemoglobin for better diagnostics in diabetes

(2016) Mashanipalya G. Jagadeeshaprasad et al.   Clinical Proteomics

DIA-Umpire: comprehensive computational framework for data-independent acquisition proteomics

(2015) Chih-Chiang Tsou et al.   NATURE METHODS

In-Depth Comparative Characterization of Hemoglobin Glycation in Normal and Diabetic Bloods by LC-MSMS

(2014) Shih-Hao Wang et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Targeted Peptide Measurements in Biology and Medicine: Best Practices for Mass Spectrometry-based Assay Development Using a Fit-for-Purpose Approach

(2014) Steven A. Carr et al.   MOLECULAR & CELLULAR PROTEOMICS

Ultrasensitive proteome analysis using paramagnetic bead technology

(2014) C. S. Hughes et al.   Molecular Systems Biology

CPTAC Assay Portal: a repository of targeted proteomic assays

(2014) Jeffrey R Whiteaker et al.   NATURE METHODS

Technical considerations for large-scale parallel reaction monitoring analysis

(2013) Sebastien Gallien et al.   Journal of Proteomics

Selectivity of LC-MS/MS analysis: Implication for proteomics experiments

(2012) Sebastien Gallien et al.   Journal of Proteomics

Parallel Reaction Monitoring for High Resolution and High Mass Accuracy Quantitative, Targeted Proteomics

(2012) Amelia C. Peterson et al.   MOLECULAR & CELLULAR PROTEOMICS

Highly Sensitive Proteome Analysis of FACS-Sorted Adult Colon Stem Cells

(2011) Serena Di Palma et al.   JOURNAL OF PROTEOME RESEARCH

Integrated Microfluidic Device for Automated Single Cell Analysis Using Electrophoretic Separation and Electrospray Ionization Mass Spectrometry

(2010) J. Scott Mellors et al.   ANALYTICAL CHEMISTRY

Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

(2010) Brendan MacLean et al.   BIOINFORMATICS

Evaluation of the Performance of the Sysmex XT-2000i Hematology Analyzer With Whole Blood Specimens Stored at Room Temperature

(2009) Valerie L. Hill et al.   Labmedicine

Multiple Reaction Monitoring-based, Multiplexed, Absolute Quantitation of 45 Proteins in Human Plasma

(2009) Michael A. Kuzyk et al.   MOLECULAR & CELLULAR PROTEOMICS

Red cell life span heterogeneity in hematologically normal people is sufficient to alter HbA1c

(2008) R. M. Cohen et al.   BLOOD