Genome-wide gene expression responses to experimental manipulation of Saccharomyces cerevisiae repressor activator protein 1 (Rap1) expression level

Rif2 protects Rap1-depleted telomeres from MRX-mediated degradation in Saccharomyces cerevisiae

(2022) Fernando Rodrigo Rosas Bringas et al.   eLife

Genomics analysis of Drosophila sechellia response to Morinda citrifolia fruit diet

(2022) Zachary Drum et al.   G3-Genes Genomes Genetics

Genomics analysis of hexanoic acid exposure in Drosophila species

(2021) Zachary A Drum et al.   G3-Genes Genomes Genetics

Gene regulatory network reconstruction using single-cell RNA sequencing of barcoded genotypes in diverse environments

(2020) Christopher A Jackson et al.   eLife

Genome Wide Effect of Tetracycline, Doxycycline and 4‐epidoxycycline on gene expression in Saccharomyces cerevisiae

(2020) G. Sanchez et al.   YEAST

Genomics Analysis of L-DOPA Exposure in Drosophila sechellia

(2019) Stephen M. Lanno et al.   G3-Genes Genomes Genetics

Chromatin Fiber Invasion and Nucleosome Displacement by the Rap1 Transcription Factor

(2019) Maxime Mivelaz et al.   MOLECULAR CELL

Repression of Divergent Noncoding Transcription by a Sequence-Specific Transcription Factor

(2018) Andrew C.K. Wu et al.   MOLECULAR CELL

General Regulatory Factors Control the Fidelity of Transcription by Restricting Non-coding and Ectopic Initiation

(2018) Drice Challal et al.   MOLECULAR CELL

Transcriptomic Analysis of Octanoic Acid Response in Drosophila sechellia Using RNA-Sequencing

(2017) Stephen M. Lanno et al.   G3-Genes Genomes Genetics

How eukaryotic genes are transcribed

(2016) Bryan J. Venters et al.   CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY

The Wrapping Loop and Rap1 C-terminal (RCT) Domain of Yeast Rap1 Modulate Access to Different DNA Binding Modes

(2015) Erik A. Feldmann et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Ribosome Biogenesis in the Yeast Saccharomyces cerevisiae

(2013) John L. Woolford et al.   GENETICS

Nonlinear Fitness Consequences of Variation in Expression Level of a Eukaryotic Gene

(2012) J. S. Rest et al.   MOLECULAR BIOLOGY AND EVOLUTION

Differential analysis of gene regulation at transcript resolution with RNA-seq

(2012) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Regulation of melanocyte pivotal transcription factor MITF by some other transcription factors

(2011) Ping Wan et al.   MOLECULAR AND CELLULAR BIOCHEMISTRY

Determinants and dynamics of genome accessibility

(2011) Oliver Bell et al.   NATURE REVIEWS GENETICS

Direct Transactivator-Transcription Factor IID (TFIID) Contacts Drive Yeast Ribosomal Protein Gene Transcription

(2010) Justin H. Layer et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Extensive role of the general regulatory factors, Abf1 and Rap1, in determining genome-wide chromatin structure in budding yeast

(2010) Mythily Ganapathi et al.   NUCLEIC ACIDS RESEARCH

Yeast Rap1 contributes to genomic integrity by activating DNA damage repair genes

(2008) Raghuvir S Tomar et al.   EMBO JOURNAL

Gene Regulation by Transcription Factors and MicroRNAs

(2008) O. Hobert   SCIENCE