Marker-assisted selection in a Pacific oyster population for an antiviral QTL conferring increased survival to OsHV-1 mortality events in Tomales Bay

Pooled resequencing of larvae and adults reveals genomic variations associated with Ostreid herpesvirus 1 resistance in the Pacific oyster Crassostrea gigas

(2022) Shanshan Yao et al.   Frontiers in Immunology

The Pacific Oyster Mortality Syndrome, a Polymicrobial and Multifactorial Disease: State of Knowledge and Future Directions

(2021) Bruno Petton et al.   Frontiers in Immunology

Twelve years of SAMtools and BCFtools

(2021) Petr Danecek et al.   GigaScience

A chromosome-level genome assembly for the Pacific oyster Crassostrea gigas

(2021) Carolina Peñaloza et al.   GigaScience

The first detection of a novel OsHV-1 microvariant in San Diego, California, USA

(2021) Colleen A. Burge et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

Genetic improvement of survival in Pacific oysters to the Tomales Bay strain of OsHV-1 over two cycles of selection

(2021) Konstantin Divilov et al.   AQUACULTURE

Aquatic pathogens and biofouling: pilot study of ostreid herpesvirus 1 translocation by bivalves

(2021) M. Fuhrmann et al.   BIOFOULING

Potential of genomic selection for improvement of resistance to ostreid herpesvirus in Pacific oyster ( Crassostrea gigas )

(2020) A. P. Gutierrez et al.   ANIMAL GENETICS

Differential basal expression of immune genes confers Crassostrea gigas resistance to Pacific oyster mortality syndrome

(2020) Julien de Lorgeril et al.   BMC GENOMICS

Harnessing genomics to fast-track genetic improvement in aquaculture

(2020) Ross D. Houston et al.   NATURE REVIEWS GENETICS

A Sustained Immune Response Supports Long-Term Antiviral Immune Priming in the Pacific Oyster, Crassostrea gigas

(2020) Maxime Lafont et al.   mBio

Fitness costs associated with maternal immune priming in the oyster

(2020) Andrew N. Robinson et al.   FISH & SHELLFISH IMMUNOLOGY

The impacts of ostreid herpesvirus 1 microvariants on Pacific oyster aquaculture in the Northern and Southern Hemispheres since 2008

(2019) M. FUHRMANN et al.   REVUE SCIENTIFIQUE ET TECHNIQUE-OFFICE INTERNATIONAL DES EPIZOOTIES

Demonstration of the Use of Environmental DNA for the Non-Invasive Genotyping of a Bivalve Mollusk, the European Flat Oyster (Ostrea edulis)

(2019) Luke E. Holman et al.   Frontiers in Genetics

First evaluation of resistance to both a California OsHV-1 variant and a French OsHV-1 microvariant in Pacific oysters

(2019) Konstantin Divilov et al.   BMC GENETICS

Axe: rapid, competitive sequence read demultiplexing using a trie

(2018) Kevin D Murray et al.   BIOINFORMATICS

OUP accepted manuscript

(2018)   BIOINFORMATICS

A Genome-Wide Association Study for Host Resistance to Ostreid Herpesvirus in Pacific Oysters ( Crassostrea gigas )

(2018) Alejandro P. Gutierrez et al.   G3-Genes Genomes Genetics

Boom-and-bust production cycles in animal seafood aquaculture

(2018) Weiwei You et al.   Reviews in Aquaculture

Long-lasting antiviral innate immune priming in the Lophotrochozoan Pacific oyster, Crassostrea gigas

(2017) Maxime Lafont et al.   Scientific Reports

Improvements in desirable traits of the Pacific oyster, Crassostrea gigas , as a result of five generations of selection on the West Coast, USA

(2016) Claudio Manoel Rodrigues de Melo et al.   AQUACULTURE

Genome-Assisted Prediction of Quantitative Traits Using the R Package sommer

(2016) Giovanny Covarrubias-Pazaran   PLoS One

Mass selection for survival and resistance to OsHV-1 infection in Crassostrea gigas spat in field conditions: response to selection after four generations

(2015) Lionel Dégremont et al.   AQUACULTURE

Transcriptome analysis reveals strong and complex antiviral response in a mollusc

(2015) Yan He et al.   FISH & SHELLFISH IMMUNOLOGY

Dual analysis of host and pathogen transcriptomes in ostreid herpesvirus 1-positiveCrassostrea gigas

(2014) U. Rosani et al.   ENVIRONMENTAL MICROBIOLOGY

Phylogeographical analyses of shellfish viruses: inferring a geographical origin for ostreid herpesviruses OsHV-1 (Malacoherpesviridae)

(2014) Frédéric Mineur et al.   MARINE BIOLOGY

Poly I:C induces a protective antiviral immune response in the Pacific oyster (Crassostrea gigas) against subsequent challenge with Ostreid herpesvirus (OsHV-1 μvar)

(2013) Timothy J. Green et al.   FISH & SHELLFISH IMMUNOLOGY

Ontogeny and water temperature influences the antiviral response of the Pacific oyster, Crassostrea gigas

(2013) Timothy J. Green et al.   FISH & SHELLFISH IMMUNOLOGY

Genome-wide efficient mixed-model analysis for association studies

(2012) Xiang Zhou et al.   NATURE GENETICS

A general and simple method for obtainingR2from generalized linear mixed-effects models

(2012) Shinichi Nakagawa et al.   Methods in Ecology and Evolution

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One