Small Intestinal Microbiota Oscillations, Host Effects and Regulation—A Zoom into Three Key Effector Molecules

High-fat diet disrupts REG3γ and gut microbial rhythms promoting metabolic dysfunction

(2022) Katya Frazier et al.   Cell Host & Microbe

External light‐dark cycle shapes gut microbiota through intrinsically photosensitive retinal ganglion cells

(2022) Chi‐Chan Lee et al.   EMBO REPORTS

Early Weaning Stress Induces Intestinal Microbiota Disturbance, Mucosal Barrier Dysfunction and Inflammation Response Activation in Pigeon Squabs

(2022) Qianqian Xu et al.   Frontiers in Microbiology

Breast Milk and the Importance of Chrononutrition

(2022) Mario Daniel Caba-Flores et al.   Frontiers in Nutrition

Diet and feeding pattern modulate diurnal dynamics of the ileal microbiome and transcriptome

(2022) Ana Carolina Dantas Machado et al.   Cell Reports

Time‐limited diets and the gut microbiota in cardiometabolic disease

(2022) Karina Ratiner et al.   Journal of Diabetes

The intestinal clock drives the microbiome to maintain gastrointestinal homeostasis

(2022) Marjolein Heddes et al.   Nature Communications

Rhythmicity of intestinal IgA responses confers oscillatory commensal microbiota mutualism

(2022) Hugo A. Penny et al.   Science Immunology

Reducing light exposure enhances the circadian rhythm of the biological clock through interactions with the gut microbiota

(2022) Yu Zhang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Linking the oral microbiome and salivary cytokine abundance to circadian oscillations

(2021) Anujit Sarkar et al.   Scientific Reports

The microbiota coordinates diurnal rhythms in innate immunity with the circadian clock

(2021) John F. Brooks et al.   CELL

Dietary suppression of MHC class II expression in intestinal epithelial cells enhances intestinal tumorigenesis

(2021) Semir Beyaz et al.   Cell Stem Cell

Parallelism of intestinal secretory IgA shapes functional microbial fitness

(2021) Tim Rollenske et al.   NATURE

Diurnal oscillations in gut bacterial load and composition eclipse seasonal and lifetime dynamics in wild meerkats

(2021) Alice Risely et al.   Nature Communications

Epithelial-myeloid exchange of MHC class II constrains immunity and microbiota composition

(2021) W. Zac Stephens et al.   Cell Reports

How neurons adjust to diurnality

(2021) Gabriele Andreatta et al.   eLife

Circadian dynamics of the teleost skin immune-microbiome interface

(2021) Amy R. Ellison et al.   Microbiome

Feeding-dependent VIP neuron–ILC3 circuit regulates the intestinal barrier

(2020) Jhimmy Talbot et al.   NATURE

Diurnal Timing Dependent Alterations in Gut Microbial Composition Are Synchronously Linked to Salt-Sensitive Hypertension and Renal Damage

(2020) Saroj Chakraborty et al.   HYPERTENSION

Arrhythmic Gut Microbiome Signatures Predict Risk of Type 2 Diabetes

(2020) Sandra Reitmeier et al.   Cell Host & Microbe

Diet Diurnally Regulates Small Intestinal Microbiome-Epithelial-Immune Homeostasis and Enteritis

(2020) Timur Tuganbaev et al.   CELL

Why do intestinal epithelial cells express MHC class II?

(2020) Cornelia Heuberger et al.   IMMUNOLOGY

Genome sequence of segmented filamentous bacteria present in the human intestine

(2020) Hans Jonsson et al.   Communications Biology

Secretory IgA in Intestinal Mucosal Secretions as an Adaptive Barrier against Microbial Cells

(2020) Bernadeta Pietrzak et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Endocytosis of commensal antigens by intestinal epithelial cells regulates mucosal T cell homeostasis

(2019) Mark S. Ladinsky et al.   SCIENCE

Oxygen and Carbon Dioxide Rhythms Are Circadian Clock Controlled and Differentially Directed by Behavioral Signals

(2019) Yaarit Adamovich et al.   Cell Metabolism

The circadian regulation of food intake

(2019) Etienne Challet   Nature Reviews Endocrinology

Maternal IgA protects against the development of necrotizing enterocolitis in preterm infants

(2019) Kathyayini P. Gopalakrishna et al.   NATURE MEDICINE

MHC Class II Antigen Presentation by the Intestinal Epithelium Initiates Graft-versus-Host Disease and Is Influenced by the Microbiota

(2019) Motoko Koyama et al.   IMMUNITY

Circadian Clock Genes and the Transcriptional Architecture of the Clock Mechanism

(2019) Kimberly H. Cox et al.   JOURNAL OF MOLECULAR ENDOCRINOLOGY

Segmented filamentous bacteria-induced immune responses: a balancing act between host protection and autoimmunity

(2018) Kyle L. Flannigan et al.   IMMUNOLOGY

Diurnal transcriptome atlas of a primate across major neural and peripheral tissues

(2018) Ludovic S. Mure et al.   SCIENCE

Presence of Segmented Filamentous Bacteria in Human Children and Its Potential Role in the Modulation of Human Gut Immunity

(2018) Bo Chen et al.   Frontiers in Microbiology

Spatial Reconstruction of Single Enterocytes Uncovers Broad Zonation along the Intestinal Villus Axis

(2018) Andreas E. Moor et al.   CELL

A database of tissue-specific rhythmically expressed human genes has potential applications in circadian medicine

(2018) Marc D. Ruben et al.   Science Translational Medicine

Epithelial MHC Class II Expression and Its Role in Antigen Presentation in the Gastrointestinal and Respiratory Tracts

(2018) Jonathan E. Wosen et al.   Frontiers in Immunology

Feeding Rapidly Alters Microbiome Composition and Gene Transcription in the Clownfish Gut

(2018) D. Joshua Parris et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

T Helper Cell Cytokines Modulate Intestinal Stem Cell Renewal and Differentiation

(2018) Moshe Biton et al.   CELL

The Mouse Microbiome Is Required for Sex-Specific Diurnal Rhythms of Gene Expression and Metabolism

(2018) Benjamin D. Weger et al.   Cell Metabolism

The intestinal microbiota regulates body composition through NFIL3 and the circadian clock

(2017) Yuhao Wang et al.   SCIENCE

Circadian clock-dependent increase in salivary IgA secretion modulated by sympathetic receptor activation in mice

(2017) Misaki Wada et al.   Scientific Reports

A Pilot Characterization of the Human Chronobiome

(2017) Carsten Skarke et al.   Scientific Reports

Microbiota Diurnal Rhythmicity Programs Host Transcriptome Oscillations

(2016) Christoph A. Thaiss et al.   CELL

Intercellular Coupling of the Cell Cycle and Circadian Clock in Adult Stem Cell Culture

(2016) Toru Matsu-ura et al.   MOLECULAR CELL

Sex differences in the gut microbiome–brain axis across the lifespan

(2016) Eldin Jašarević et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Pitfalls of probiotics

(2016) N. R. Bhakta   Science Translational Medicine

Time for Food: The Intimate Interplay between Nutrition, Metabolism, and the Circadian Clock

(2015) Gad Asher et al.   CELL

Th17 Cell Induction by Adhesion of Microbes to Intestinal Epithelial Cells

(2015) Koji Atarashi et al.   CELL

Effects of Diurnal Variation of Gut Microbes and High-Fat Feeding on Host Circadian Clock Function and Metabolism

(2015) Vanessa Leone et al.   Cell Host & Microbe

Induction of Th17 cells by segmented filamentous bacteria in the murine intestine

(2015) Adam M. Farkas et al.   JOURNAL OF IMMUNOLOGICAL METHODS

Rhythmicity of the intestinal microbiota is regulated by gender and the host circadian clock

(2015) Xue Liang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transkingdom Control of Microbiota Diurnal Oscillations Promotes Metabolic Homeostasis

(2014) Christoph A. Thaiss et al.   CELL

Diet and Feeding Pattern Affect the Diurnal Dynamics of the Gut Microbiome

(2014) Amir Zarrinpar et al.   Cell Metabolism

A circadian gene expression atlas in mammals: Implications for biology and medicine

(2014) Ray Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Maternal hypertension induces alterations in immunological factors of colostrum and human milk

(2014) Patrícia Fernandes Massmann et al.   Frontiers in Life Science

Homeostasis in Intestinal Epithelium Is Orchestrated by the Circadian Clock and Microbiota Cues Transduced by TLRs

(2013) Atish Mukherji et al.   CELL

Fasting of mice: a review

(2013) TL Jensen et al.   LABORATORY ANIMALS

REG3γ-deficient mice have altered mucus distribution and increased mucosal inflammatory responses to the microbiota and enteric pathogens in the ileum

(2013) L MP Loonen et al.   Mucosal Immunology

Richness of human gut microbiome correlates with metabolic markers

(2013) Emmanuelle Le Chatelier et al.   NATURE

Antibacterial membrane attack by a pore-forming intestinal C-type lectin

(2013) Sohini Mukherjee et al.   NATURE

Fungi of the Murine Gut: Episodic Variation and Proliferation during Antibiotic Treatment

(2013) Serena Dollive et al.   PLoS One

Inflammation-associated enterotypes, host genotype, cage and inter-individual effects drive gut microbiota variation in common laboratory mice

(2013) Falk Hildebrand et al.   GENOME BIOLOGY

Host genetic and environmental effects on mouse intestinal microbiota

(2012) James H Campbell et al.   ISME Journal

Temporal and spatial interplay of microbiota and intestinal mucosa drive establishment of immune homeostasis in conventionalized mice

(2012) Sahar El Aidy et al.   Mucosal Immunology

Complete Genome Sequences of Rat and Mouse Segmented Filamentous Bacteria, a Potent Inducer of Th17 Cell Differentiation

(2011) Tulika Prakash et al.   Cell Host & Microbe

Enterotypes of the human gut microbiome

(2011) Manimozhiyan Arumugam et al.   NATURE

The Antibacterial Lectin RegIII  Promotes the Spatial Segregation of Microbiota and Host in the Intestine

(2011) S. Vaishnava et al.   SCIENCE

Adaptive Immune Regulation in the Gut: T Cell–Dependent and T Cell–Independent IgA Synthesis

(2010) Sidonia Fagarasan et al.   Annual Review of Immunology

The Mammalian Circadian Timing System: Organization and Coordination of Central and Peripheral Clocks

(2010) Charna Dibner et al.   Annual Review of Physiology

Time-dependent alterations of soluble and cellular components in human milk

(2010) Eduardo Luzía França et al.   BIOLOGICAL RHYTHM RESEARCH

The Key Role of Segmented Filamentous Bacteria in the Coordinated Maturation of Gut Helper T Cell Responses

(2009) Valérie Gaboriau-Routhiau et al.   IMMUNITY

Specific Microbiota Direct the Differentiation of IL-17-Producing T-Helper Cells in the Mucosa of the Small Intestine

(2008) Ivaylo I. Ivanov et al.   Cell Host & Microbe

Transcriptional Profiling of mRNA Expression in the Mouse Distal Colon

(2008) Willemijntje A. Hoogerwerf et al.   GASTROENTEROLOGY

Paneth cells directly sense gut commensals and maintain homeostasis at the intestinal host-microbial interface

(2008) S. Vaishnava et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA