Accurate and fast clade assignment via deep learning and frequency chaos game representation

Covidex: An ultrafast and accurate tool for SARS-CoV-2 subtyping

(2022) Marco Cacciabue et al.   INFECTION GENETICS AND EVOLUTION

PWM2Vec: An Efficient Embedding Approach for Viral Host Specification from Coronavirus Spike Sequences

(2022) Sarwan Ali et al.   Biology-Basel

Quantifying the separability of data classes in neural networks

(2021) Achim Schilling et al.   NEURAL NETWORKS

Prediction of antimicrobial resistance based on whole-genome sequencing and machine learning

(2021) Yunxiao Ren et al.   BIOINFORMATICS

Machine learning using intrinsic genomic signatures for rapid classification of novel pathogens: COVID-19 case study

(2020) Gurjit S. Randhawa et al.   PLoS One

Deep learning on chaos game representation for proteins

(2019) Hannah F Löchel et al.   BIOINFORMATICS

Nextstrain: real-time tracking of pathogen evolution

(2018) James Hadfield et al.   BIOINFORMATICS