Chromosome-level genome assembly of goose provides insight into the adaptation and growth of local goose breeds

Twelve years of SAMtools and BCFtools

(2021) Petr Danecek et al.   GigaScience

Genome-Wide Association Study-Based Identification of SNPs and Haplotypes Associated With Goose Reproductive Performance and Egg Quality

(2021) Guangliang Gao et al.   Frontiers in Genetics

Genome-wide association analysis reveals that EDNRB2 causes a dose-dependent loss of pigmentation in ducks

(2021) Yang Xi et al.   BMC GENOMICS

GPR180 is a component of TGFβ signalling that promotes thermogenic adipocyte function and mediates the metabolic effects of the adipocyte-secreted factor CTHRC1

(2021) Lucia Balazova et al.   Nature Communications

Pacific Biosciences assembly with Hi-C mapping generates an improved, chromosome-level goose genome

(2020) Yan Li et al.   GigaScience

Deciphering Hi-C: from 3D genome to function

(2019) Siyuan Kong et al.   CELL BIOLOGY AND TOXICOLOGY

Comparison of the broody behavior characteristics of different breeds of geese

(2019) Y Yao et al.   POULTRY SCIENCE

Assembly of chromosome-scale contigs by efficiently resolving repetitive sequences with long reads

(2019) Huilong Du et al.   Nature Communications

Linear assembly of a human centromere on the Y chromosome

(2018) Miten Jain et al.   NATURE BIOTECHNOLOGY

Single molecule real-time (SMRT) sequencing comes of age: applications and utilities for medical diagnostics

(2018) Simon Ardui et al.   NUCLEIC ACIDS RESEARCH

Olfactory receptor OR2AT4 regulates human hair growth

(2018) Jérémy Chéret et al.   Nature Communications

Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation

(2017) Sergey Koren et al.   GENOME RESEARCH

De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds

(2017) Olga Dudchenko et al.   SCIENCE

Advantages of genome sequencing by long-read sequencer using SMRT technology in medical area

(2017) Kazuma Nakano et al.   Human Cell

Genome and metagenome analyses reveal adaptive evolution of the host and interaction with the gut microbiota in the goose

(2016) Guangliang Gao et al.   Scientific Reports

The goose genome sequence leads to insights into the evolution of waterfowl and susceptibility to fatty liver

(2015) Lizhi Lu et al.   GENOME BIOLOGY

Mutations of <i>TYR</i> and <i>MITF</i> Genes are Associated with Plumage Colour Phenotypes in Geese

(2014) Ye Wang et al.   ASIAN-AUSTRALASIAN JOURNAL OF ANIMAL SCIENCES

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

C18 ORF1, a Novel Negative Regulator of Transforming Growth Factor-β Signaling

(2014) Naoko Nakano et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle

(2014) Hans D Daetwyler et al.   NATURE GENETICS

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

(2014) Bruce J. Walker et al.   PLoS One

Estimating Gene Gain and Loss Rates in the Presence of Error in Genome Assembly and Annotation Using CAFE 3

(2013) Mira V. Han et al.   MOLECULAR BIOLOGY AND EVOLUTION

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

(2012) Y. Wang et al.   NUCLEIC ACIDS RESEARCH

clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

(2012) Guangchuang Yu et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Two maternal origins of Chinese domestic goose

(2011) H. F. Li et al.   POULTRY SCIENCE

CD-HIT Suite: a web server for clustering and comparing biological sequences

(2010) Ying Huang et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS