The complex role of transcription factor GAGA in germline death during Drosophila spermatogenesis: transcriptomic and bioinformatic analyses

Long Non-Coding RNAs in Insects

(2021) Chhavi Choudhary et al.   Animals

Lack of GAGA protein in Trl mutants causes massive cell death in Drosophila spermatogenesis and oogenesis

(2021) N. V. Dorogova et al.   Vavilovskii Zhurnal Genetiki i Selektsii

Analysis of insect nuclear small heat shock proteins and interacting proteins

(2020) Mohamed Taha Moutaoufik et al.   CELL STRESS & CHAPERONES

Pioneer-like factor GAF cooperates with PBAP (SWI/SNF) and NURF (ISWI) to regulate transcription

(2020) Julius Judd et al.   GENES & DEVELOPMENT

IRIS-EDA: An integrated RNA-Seq interpretation system for gene expression data analysis

(2019) Brandon Monier et al.   PLoS Computational Biology

Insights into the Functions of LncRNAs in Drosophila

(2019) Keqin Li et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The lncRNA hsrω regulates arginine dimethylation of FUS to cause its proteasomal degradation in Drosophila

(2019) Luca Lo Piccolo et al.   JOURNAL OF CELL SCIENCE

Molecular mechanisms of cell death: recommendations of the Nomenclature Committee on Cell Death 2018

(2018) Lorenzo Galluzzi et al.   CELL DEATH AND DIFFERENTIATION

Molecular mechanisms driving transcriptional stress responses

(2018) Anniina Vihervaara et al.   NATURE REVIEWS GENETICS

Analysis of Drosophila melanogaster testis transcriptome

(2018) Viktor Vedelek et al.   BMC GENOMICS

GAGA protein is required for multiple aspects of Drosophila oogenesis and female fertility

(2018) Elena V. Fedorova et al.   GENESIS

Investigation of the Developmental Requirements of Drosophila HP1 and Insulator Protein Partner, HIPP1

(2018) Steve E. Glenn et al.   G3-Genes Genomes Genetics

Long non-coding RNAs act as regulators of cell autophagy in diseases

(2017) Zhijie Xu et al.   ONCOLOGY REPORTS

Enhancer of polycomb coordinates multiple signaling pathways to promote both cyst and germline stem cell differentiation in the Drosophila adult testis

(2017) Lijuan Feng et al.   PLoS Genetics

p53-dependent programmed necrosis controls germ cell homeostasis during spermatogenesis

(2017) Francesco Napoletano et al.   PLoS Genetics

Repression of Abd-B by Polycomb is critical for cell identity maintenance in adult Drosophila testis

(2017) Shuo Zhang et al.   Scientific Reports

Sample size calculation while controlling false discovery rate for differential expression analysis with RNA-sequencing experiments

(2016) Ran Bi et al.   BMC BIOINFORMATICS

Long noncoding RNA (lincRNA), a new paradigm in gene expression control

(2016) Emre Deniz et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Transcription factors GAF and HSF act at distinct regulatory steps to modulate stress-induced gene activation

(2016) Fabiana M. Duarte et al.   GENES & DEVELOPMENT

Critical roles of long noncoding RNAs inDrosophilaspermatogenesis

(2016) Kejia Wen et al.   GENOME RESEARCH

Enrichr: a comprehensive gene set enrichment analysis web server 2016 update

(2016) Maxim V. Kuleshov et al.   NUCLEIC ACIDS RESEARCH

GAGA factor, a positive regulator of global gene expression, modulates transcriptional pausing and organization of upstream nucleosomes

(2016) Shih-Ying Tsai et al.   Epigenetics & Chromatin

A Voltage-Gated Calcium Channel Regulates Lysosomal Fusion with Endosomes and Autophagosomes and Is Required for Neuronal Homeostasis

(2015) Xuejun Tian et al.   PLOS BIOLOGY

GAGA Factor Maintains Nucleosome-Free Regions and Has a Role in RNA Polymerase II Recruitment to Promoters

(2015) Nicholas J. Fuda et al.   PLoS Genetics

GAGA protein is essential for male germ cell development inDrosophila

(2014) Natalia V. Dorogova et al.   GENESIS

Comparison of D. melanogaster and C. elegans developmental stages, tissues, and cells by modENCODE RNA-seq data

(2014) J. J. Li et al.   GENOME RESEARCH

Diversity and dynamics of the Drosophila transcriptome

(2014) James B. Brown et al.   NATURE

Scotty: a web tool for designing RNA-Seq experiments to measure differential gene expression

(2013) Michele A. Busby et al.   BIOINFORMATICS

Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool

(2013) Edward Y Chen et al.   BMC BIOINFORMATICS

Alternative Germ Cell Death Pathway in Drosophila Involves HtrA2/Omi, Lysosomes, and a Caspase-9 Counterpart

(2013) Keren Yacobi-Sharon et al.   DEVELOPMENTAL CELL

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Drosophila GAGA factor is required for full activation of the dE2f1-Yki/Sd transcriptional program

(2012) Battuya Bayarmagnai et al.   CELL CYCLE

Regulation and Function of Autophagy during Cell Survival and Cell Death

(2012) G. Das et al.   Cold Spring Harbor Perspectives in Biology

ARTS, the unusual septin: structural and functional aspects

(2011) Yael Mandel-Gutfreund et al.   BIOLOGICAL CHEMISTRY

The large noncoding hsrω-n transcripts are essential for thermotolerance and remobilization of hnRNPs, HP1 and RNA polymerase II during recovery from heat shock in Drosophila

(2011) Subhash C. Lakhotia et al.   CHROMOSOMA

Analysis and recognition of the GAGA transcription factor binding sites in Drosophila genes

(2011) E.S. Omelina et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists

(2009) Eran Eden et al.   BMC BIOINFORMATICS

Drosophila retinal pigment cell death is regulated in a position-dependent manner by a cell memory gene

(2007) Nicolas Dos-Santos et al.   INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY