Regularizing priors for Bayesian VAR applications to large ecological datasets

Predictive Inference Based on Markov Chain Monte Carlo Output

(2020) Fabian Krüger et al.   INTERNATIONAL STATISTICAL REVIEW

Bayesian inference to partition determinants of community dynamics from observational time series

(2019) C. M. Mutshinda et al.   COMMUNITY ECOLOGY

On the Gaussian Mixture Representation of the Laplace Distribution

(2018) Peng Ding et al.   AMERICAN STATISTICIAN

Effects of warming ocean conditions on feeding ecology of small pelagic fishes in a coastal upwelling ecosystem: a shift to gelatinous food sources

(2018) RD Brodeur et al.   MARINE ECOLOGY PROGRESS SERIES

Effects of warming ocean conditions on feeding ecology of small pelagic fishes in a coastal upwelling ecosystem: a shift to gelatinous food sources

(2018) RD Brodeur et al.   MARINE ECOLOGY PROGRESS SERIES

brms: An R Package for Bayesian Multilevel Models Using Stan

(2017) Paul-Christian Bürkner   Journal of Statistical Software

Stan: A Probabilistic Programming Language

(2017) Bob Carpenter et al.   Journal of Statistical Software

How are species interactions structured in species-rich communities? A new method for analysing time-series data

(2017) Otso Ovaskainen et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Sparsity information and regularization in the horseshoe and other shrinkage priors

(2017) Juho Piironen et al.   Electronic Journal of Statistics

Practical Bayesian model evaluation using leave-one-out cross-validation and WAIC

(2016) Aki Vehtari et al.   STATISTICS AND COMPUTING

Regularization Paths for Generalized Linear Models via Coordinate Descent

(2015) Jerome Friedman et al.   Journal of Statistical Software

New target fisheries lead to spatially variable food web effects in an ecosystem model of the California Current

(2014) K.N. Marshall et al.   ECOLOGICAL MODELLING

Shifting Regimes and Changing Interactions in the Lake Washington, U.S.A., Plankton Community from 1962–1994

(2014) Tessa B. Francis et al.   PLoS One

Quantifying effects of abiotic and biotic drivers on community dynamics with multivariate autoregressive (MAR) models

(2013) Stephanie E. Hampton et al.   ECOLOGY

Impacts of depleting forage species in the California Current

(2013) ISAAC C. KAPLAN et al.   ENVIRONMENTAL CONSERVATION

Big data and the future of ecology

(2013) Stephanie E Hampton et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

Assessing marine plankton community structure from long-term monitoring data with multivariate autoregressive (MAR) models: a comparison of fixed station versus spatially distributed sampling data

(2012) Lindsay P. Scheef et al.   LIMNOLOGY AND OCEANOGRAPHY-METHODS

Screening California Current fishery management scenarios using the Atlantis end-to-end ecosystem model

(2012) Isaac C. Kaplan et al.   PROGRESS IN OCEANOGRAPHY

Diversity and stability of herbivorous fishes on coral reefs

(2011) Loïc M. Thibaut et al.   ECOLOGY

The horseshoe estimator for sparse signals

(2010) C. M. Carvalho et al.   BIOMETRIKA

A comparison of remote vs. local influence of El Niño on the coastal circulation of the northeast Pacific

(2009) Albert J. Hermann et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Preventing the collapse of the Baltic cod stock through an ecosystem-based management approach

(2009) M. Lindegren et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

What drives community dynamics?

(2009) C. M. Mutshinda et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Generalized linear mixed models: a practical guide for ecology and evolution

(2009) Benjamin M. Bolker et al.   TRENDS IN ECOLOGY & EVOLUTION

Stepwise Model Fitting and Statistical Inference: Turning Noise into Signal Pollution

(2008) Roger Mundry et al.   AMERICAN NATURALIST

Coordinate descent algorithms for lasso penalized regression

(2008) Tong Tong Wu et al.   Annals of Applied Statistics

Sixty years of environmental change in the world's largest freshwater lake - Lake Baikal, Siberia

(2008) STEPHANIE E. HAMPTON et al.   GLOBAL CHANGE BIOLOGY

The Bayesian Lasso

(2008) Trevor Park et al.   JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION

The future of biocuration

(2008) Doug Howe et al.   NATURE