Chronic sleep loss disrupts rhythmic gene expression in Drosophila

The Regulation of Drosophila Sleep

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Chronic social isolation signals starvation and reduces sleep in Drosophila

(2021) Wanhe Li et al.   NATURE

Sleep–wake-driven and circadian contributions to daily rhythms in gene expression and chromatin accessibility in the murine cortex

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Genomics of circadian rhythms in health and disease

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Diurnal transcriptome atlas of a primate across major neural and peripheral tissues

(2018) Ludovic S. Mure et al.   SCIENCE

Sleep Deprivation and Caffeine Treatment Potentiate Photic Resetting of the Master Circadian Clock in a Diurnal Rodent

(2017) Pawan Kumar Jha et al.   JOURNAL OF NEUROSCIENCE

Circadian deep sequencing reveals stress-response genes that adopt robust rhythmic expression during aging

(2017) Rachael C. Kuintzle et al.   Nature Communications

Suppression of Insulin Production and Secretion by a Decretin Hormone

(2015) Ronald W. Alfa et al.   Cell Metabolism

How deeply does your mutant sleep? Probing arousal to better understand sleep defects in Drosophila

(2015) R. Faville et al.   Scientific Reports

Caffeine increases light responsiveness of the mouse circadian pacemaker

(2014) Hester C. van Diepen et al.   EUROPEAN JOURNAL OF NEUROSCIENCE

WIDE AWAKE Mediates the Circadian Timing of Sleep Onset

(2014) Sha Liu et al.   NEURON

FlyBase: introduction of the Drosophila melanogaster Release 6 reference genome assembly and large-scale migration of genome annotations

(2014) G. dos Santos et al.   NUCLEIC ACIDS RESEARCH

A circadian gene expression atlas in mammals: Implications for biology and medicine

(2014) Ray Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

Activation of transposable elements during aging and neuronal decline in Drosophila

(2013) Wanhe Li et al.   NATURE NEUROSCIENCE

The Smc5/Smc6/MAGE Complex Confers Resistance to Caffeine and Genotoxic Stress in Drosophila melanogaster

(2013) Xiao Li et al.   PLoS One

Measurement of Lifespan in Drosophila melanogaster

(2013) Nancy J. Linford et al.   Jove-Journal of Visualized Experiments

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Deep sequencing the circadian and diurnal transcriptome of Drosophila brain

(2012) M. E. Hughes et al.   GENOME RESEARCH

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

(2012) Davis J. McCarthy et al.   NUCLEIC ACIDS RESEARCH

Transcriptional Architecture and Chromatin Landscape of the Core Circadian Clock in Mammals

(2012) N. Koike et al.   SCIENCE

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

(2011) P. Gaudet et al.   BRIEFINGS IN BIOINFORMATICS

insomniac and Cullin-3 Regulate Sleep and Wakefulness in Drosophila

(2011) Nicholas Stavropoulos et al.   NEURON

Analyzing circadian expression data by harmonic regression based on autoregressive spectral estimation

(2010) R. Yang et al.   BIOINFORMATICS

Partial Sleep Deprivation Reduces Phase Advances to Light in Humans

(2010) Helen J. Burgess   JOURNAL OF BIOLOGICAL RHYTHMS

JTK_CYCLE: An Efficient Nonparametric Algorithm for Detecting Rhythmic Components in Genome-Scale Data Sets

(2010) Michael E. Hughes et al.   JOURNAL OF BIOLOGICAL RHYTHMS

pySolo: a complete suite for sleep analysis in Drosophila

(2009) G. F. Gilestro et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Homeostatic Sleep Pressure and Responses to Sustained Attention in the Suprachiasmatic Area

(2009) C. Schmidt et al.   SCIENCE

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH