Post-vaccine epidemiology of serotype 3 pneumococci identifies transformation inhibition through prophage-driven alteration of a non-coding RNA
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Title
Post-vaccine epidemiology of serotype 3 pneumococci identifies transformation inhibition through prophage-driven alteration of a non-coding RNA
Authors
Keywords
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Journal
Genome Medicine
Volume 14, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2022-12-20
DOI
10.1186/s13073-022-01147-2
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Note: Only part of the references are listed.- Analysing pneumococcal invasiveness using Bayesian models of pathogen progression rates
- (2022) Alessandra Løchen et al. PLoS Computational Biology
- The emerging role of bacterial regulatory RNAs in disease
- (2022) Hannes Eichner et al. TRENDS IN MICROBIOLOGY
- Epidemiological dynamics of bacteriocin competition and antibiotic resistance
- (2022) Sonja Lehtinen et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Pneumococcal within-host diversity during colonization, transmission and treatment
- (2022) Gerry Tonkin-Hill et al. Nature Microbiology
- New pneumococcal serotype 15D
- (2021) Fabiana Pimenta et al. JOURNAL OF CLINICAL MICROBIOLOGY
- The role of interspecies recombination in the evolution of antibiotic-resistant pneumococci
- (2021) Joshua C D'Aeth et al. eLife
- RCandy: an R package for visualizing homologous recombinations in bacterial genomes
- (2021) Chrispin Chaguza et al. BIOINFORMATICS
- Grad‐seq in a Gram‐positive bacterium reveals exonucleolytic sRNA activation in competence control
- (2020) Jens Hör et al. EMBO JOURNAL
- A New Pneumococcal Capsule Type, 10D, is the 100th Serotype and Has a Large cps Fragment from an Oral Streptococcus
- (2020) Feroze Ganaie et al. mBio
- Visualizing variation within Global Pneumococcal Sequence Clusters (GPSCs) and country population snapshots to contextualize pneumococcal isolates
- (2020) Rebecca A. Gladstone et al. Microbial Genomics
- Lysogeny in Streptococcus pneumoniae
- (2020) Geneviève Garriss et al. Microorganisms
- Rfam 14: expanded coverage of metagenomic, viral and microRNA families
- (2020) Ioanna Kalvari et al. NUCLEIC ACIDS RESEARCH
- Sugar-Coated Killer: Serotype 3 Pneumococcal Disease
- (2020) Jennifer N. Luck et al. Frontiers in Cellular and Infection Microbiology
- Fast and flexible bacterial genomic epidemiology with PopPUNK
- (2019) John A. Lees et al. GENOME RESEARCH
- Persistent circulation of vaccine serotypes and serotype replacement after five years of UK infant immunisation with PCV13
- (2019) Rama Kandasamy et al. JOURNAL OF INFECTIOUS DISEASES
- A Fast Likelihood Method to Reconstruct and Visualize Ancestral Scenarios
- (2019) Sohta A Ishikawa et al. MOLECULAR BIOLOGY AND EVOLUTION
- Assembly of long, error-prone reads using repeat graphs
- (2019) Mikhail Kolmogorov et al. NATURE BIOTECHNOLOGY
- International genomic definition of pneumococcal lineages, to contextualise disease, antibiotic resistance and vaccine impact
- (2019) Rebecca A. Gladstone et al. EBioMedicine
- Methylation warfare: interaction of pneumococcal bacteriophages with their host
- (2019) Leonardo Furi et al. JOURNAL OF BACTERIOLOGY
- Diverse conjugative elements silence natural transformation in Legionella species
- (2019) Isabelle Durieux et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Synergistic Activity of Mobile Genetic Element Defences in Streptococcus pneumoniae
- (2019) Min Jung Kwun et al. Genes
- The Genomics of Streptococcus Pneumoniae Carriage Isolates from UK Children and Their Household Contacts, Pre-PCV7 to Post-PCV13
- (2019) Sheppard et al. Genes
- Evolution of Streptococcus pneumoniae Serotype 3 in England and Wales: A Major Vaccine Evader
- (2019) Groves et al. Genes
- Burden of Streptococcus pneumoniae and Haemophilus influenzae type b disease in children in the era of conjugate vaccines: global, regional, and national estimates for 2000–15
- (2018) Brian Wahl et al. Lancet Global Health
- Pneumococcal Vaccines: Host Interactions, Population Dynamics, and Design Principles
- (2018) Nicholas J. Croucher et al. Annual Review of Microbiology
- Bayesian inference of ancestral dates on bacterial phylogenetic trees
- (2018) Xavier Didelot et al. NUCLEIC ACIDS RESEARCH
- Global emergence and population dynamics of divergent serotype 3 CC180 pneumococci
- (2018) Taj Azarian et al. PLoS Pathogens
- Fast and accurate de novo genome assembly from long uncorrected reads
- (2017) Robert Vaser et al. GENOME RESEARCH
- Transformation Asymmetry and the Evolution of the Bacterial Accessory Genome
- (2017) Katinka J Apagyi et al. MOLECULAR BIOLOGY AND EVOLUTION
- Differential analysis of RNA-seq incorporating quantification uncertainty
- (2017) Harold Pimentel et al. NATURE METHODS
- IntaRNA 2.0: enhanced and customizable prediction of RNA–RNA interactions
- (2017) Martin Mann et al. NUCLEIC ACIDS RESEARCH
- Genome-wide identification of lineage and locus specific variation associated with pneumococcal carriage duration
- (2017) John A Lees et al. eLife
- Frequency-dependent selection in vaccine-associated pneumococcal population dynamics
- (2017) Jukka Corander et al. Nature Ecology & Evolution
- Pneumococcal prophages are diverse, but not without structure or history
- (2017) Angela B. Brueggemann et al. Scientific Reports
- Understanding pneumococcal serotype 1 biology through population genomic analysis
- (2016) Chrispin Chaguza et al. BMC INFECTIOUS DISEASES
- Near-optimal probabilistic RNA-seq quantification
- (2016) Nicolas L Bray et al. NATURE BIOTECHNOLOGY
- Cloning-independent markerless gene editing in Streptococcus sanguinis: novel insights in type IV pilus biology
- (2016) Ishwori Gurung et al. NUCLEIC ACIDS RESEARCH
- Silencing of natural transformation by an RNA chaperone and a multitarget small RNA
- (2016) Laetitia Attaiech et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- ggtree: anrpackage for visualization and annotation of phylogenetic trees with their covariates and other associated data
- (2016) Guangchuang Yu et al. Methods in Ecology and Evolution
- Horizontal DNA Transfer Mechanisms of Bacteria as Weapons of Intragenomic Conflict
- (2016) Nicholas J. Croucher et al. PLOS BIOLOGY
- Capsular Polysaccharide (CPS) Release by Serotype 3 Pneumococcal Strains Reduces the Protective Effect of Anti-Type 3 CPS Antibodies
- (2015) Eun Hwa Choi et al. Clinical and Vaccine Immunology
- Genetic Stabilization of the Drug-Resistant PMEN1 Pneumococcus Lineage by Its Distinctive DpnIII Restriction-Modification System
- (2015) Rory A. Eutsey et al. mBio
- Control of competence by related non-coding csRNAs in Streptococcus pneumoniae R6
- (2015) Anke Laux et al. Frontiers in Genetics
- circlize implements and enhances circular visualization in R
- (2014) Zuguang Gu et al. BIOINFORMATICS
- Prokka: rapid prokaryotic genome annotation
- (2014) T. Seemann BIOINFORMATICS
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- (2014) Alexandros Stamatakis BIOINFORMATICS
- Variable recombination dynamics during the emergence, transmission and ‘disarming’ of a multidrug-resistant pneumococcal clone
- (2014) Nicholas J Croucher et al. BMC BIOLOGY
- Evidence for Soft Selective Sweeps in the Evolution of Pneumococcal Multidrug Resistance and Vaccine Escape
- (2014) Nicholas J. Croucher et al. Genome Biology and Evolution
- Serotype-specific effectiveness and correlates of protection for the 13-valent pneumococcal conjugate vaccine: a postlicensure indirect cohort study
- (2014) Nick J Andrews et al. LANCET INFECTIOUS DISEASES
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
- (2014) Nicholas J. Croucher et al. NUCLEIC ACIDS RESEARCH
- Streptococcus pneumoniae, le transformiste
- (2014) Calum Johnston et al. TRENDS IN MICROBIOLOGY
- Diversification of bacterial genome content through distinct mechanisms over different timescales
- (2014) Nicholas J. Croucher et al. Nature Communications
- Heterogeneity in the Frequency and Characteristics of Homologous Recombination in Pneumococcal Evolution
- (2014) Rafal Mostowy et al. PLoS Genetics
- Infernal 1.1: 100-fold faster RNA homology searches
- (2013) E. P. Nawrocki et al. BIOINFORMATICS
- Comparative Immunogenicity and Efficacy of 13-Valent and 7-Valent Pneumococcal Conjugate Vaccines in Reducing Nasopharyngeal Colonization: A Randomized Double-Blind Trial
- (2013) Ron Dagan et al. CLINICAL INFECTIOUS DISEASES
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- Target evaluation of the non-coding csRNAs reveals a link of the two-component regulatory system CiaRH to competence control inStreptococcus pneumoniae R6
- (2013) Anke Schnorpfeil et al. MOLECULAR MICROBIOLOGY
- Dominant Role of Nucleotide Substitution in the Diversification of Serotype 3 Pneumococci over Decades and during a Single Infection
- (2013) Nicholas J. Croucher et al. PLoS Genetics
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Genome Analysis of a Highly Virulent Serotype 1 Strain of Streptococcus pneumoniae from West Africa
- (2012) Tiffany M. Williams et al. PLoS One
- In Vivo Capsular Switch in Streptococcus pneumoniae – Analysis by Whole Genome Sequencing
- (2012) Fen Z. Hu et al. PLoS One
- Improved prediction of RNA tertiary structure with insights into native state dynamics
- (2012) J. P. Bida et al. RNA
- Identification of 88 regulatory small RNAs in the TIGR4 strain of the human pathogen Streptococcus pneumoniae
- (2012) P. Acebo et al. RNA
- Rapid Pneumococcal Evolution in Response to Clinical Interventions
- (2011) N. J. Croucher et al. SCIENCE
- genoPlotR: comparative gene and genome visualization in R
- (2010) L. Guy et al. BIOINFORMATICS
- FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
- (2010) Morgan N. Price et al. PLoS One
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- BLAST+: architecture and applications
- (2009) Christiam Camacho et al. BMC BIOINFORMATICS
- Wall Teichoic Acid Function, Biosynthesis, and Inhibition
- (2009) Jonathan G. Swoboda et al. CHEMBIOCHEM
- Comparative Genomic Analysis of Ten Streptococcus pneumoniae Temperate Bacteriophages
- (2009) P. Romero et al. JOURNAL OF BACTERIOLOGY
- Pneumococcal Serotypes and Mortality following Invasive Pneumococcal Disease: A Population-Based Cohort Study
- (2009) Zitta B. Harboe et al. PLOS MEDICINE
- Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database
- (2008) Tim Carver et al. BIOINFORMATICS
- Role of Conjugative Elements in the Evolution of the Multidrug-Resistant Pandemic Clone Streptococcus pneumoniaeSpain23F ST81
- (2008) N. J. Croucher et al. JOURNAL OF BACTERIOLOGY
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