Quantifying the local adaptive landscape of a nascent bacterial community
Published 2023 View Full Article
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Title
Quantifying the local adaptive landscape of a nascent bacterial community
Authors
Keywords
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Journal
Nature Communications
Volume 14, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2023-01-17
DOI
10.1038/s41467-022-35677-5
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Note: Only part of the references are listed.- Mutualism-enhancing mutations dominate early adaptation in a two-species microbial community
- (2023) Sandeep Venkataram et al. Nature Ecology & Evolution
- Idiosyncratic epistasis leads to global fitness–correlated trends
- (2022) Christopher W. Bakerlee et al. SCIENCE
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- (2021) Gautam Reddy et al. eLife
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- (2021) Kimberly S. Vasquez et al. Cell Host & Microbe
- Molecular signatures of resource competition: Clonal interference favors ecological diversification and can lead to incipient speciation
- (2021) Massimo Amicone et al. EVOLUTION
- Fitness variation across subtle environmental perturbations reveals local modularity and global pleiotropy of adaptation
- (2020) Grant Kinsler et al. eLife
- Evolutionary dynamics of bacteria in the gut microbiome within and across hosts
- (2019) Nandita R. Garud et al. PLOS BIOLOGY
- Adaptive Evolution within Gut Microbiomes of Healthy People
- (2019) Shijie Zhao et al. Cell Host & Microbe
- High-resolution lineage tracking reveals travelling wave of adaptation in laboratory yeast
- (2019) Alex N. Nguyen Ba et al. NATURE
- Higher-fitness yeast genotypes are less robust to deleterious mutations
- (2019) Milo S. Johnson et al. SCIENCE
- Single nucleotide mapping of trait space reveals Pareto fronts that constrain adaptation
- (2019) Yuping Li et al. Nature Ecology & Evolution
- Hidden Complexity of Yeast Adaptation under Simple Evolutionary Conditions
- (2018) Yuping Li et al. CURRENT BIOLOGY
- Renewing Felsenstein’s phylogenetic bootstrap in the era of big data
- (2018) F. Lemoine et al. NATURE
- GOATOOLS: A Python library for Gene Ontology analyses
- (2018) D. V. Klopfenstein et al. Scientific Reports
- Mutant phenotypes for thousands of bacterial genes of unknown function
- (2018) Morgan N. Price et al. NATURE
- Adaptation limits ecological diversification and promotes ecological tinkering during the competition for substitutable resources
- (2018) Benjamin H. Good et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The dynamics of adaptive genetic diversity during the early stages of clonal evolution
- (2018) Jamie R. Blundell et al. Nature Ecology & Evolution
- Core Genes Evolve Rapidly in the Long-Term Evolution Experiment with Escherichia coli
- (2017) Rohan Maddamsetti et al. Genome Biology and Evolution
- Effects of Beneficial Mutations in pykF Gene Vary over Time and across Replicate Populations in a Long-Term Experiment with Bacteria
- (2017) Fen Peng et al. MOLECULAR BIOLOGY AND EVOLUTION
- Recurrent Reverse Evolution Maintains Polymorphism after Strong Bottlenecks in Commensal Gut Bacteria
- (2017) Ana Sousa et al. MOLECULAR BIOLOGY AND EVOLUTION
- The dynamics of molecular evolution over 60,000 generations
- (2017) Benjamin H. Good et al. NATURE
- Human Gut Microbiota: Toward an Ecology of Disease
- (2017) Susannah Selber-Hnatiw et al. Frontiers in Microbiology
- Metabolic modelling in a dynamic evolutionary framework predicts adaptive diversification of bacteria in a long-term evolution experiment
- (2016) Tobias Großkopf et al. BMC EVOLUTIONARY BIOLOGY
- Development of a Comprehensive Genotype-to-Fitness Map of Adaptation-Driving Mutations in Yeast
- (2016) Sandeep Venkataram et al. CELL
- Tempo and mode of genome evolution in a 50,000-generation experiment
- (2016) Olivier Tenaillon et al. NATURE
- High-Throughput Identification of Adaptive Mutations in Experimentally Evolved Yeast Populations
- (2016) Celia Payen et al. PLoS Genetics
- Microbes as Engines of Ecosystem Function: When Does Community Structure Enhance Predictions of Ecosystem Processes?
- (2016) Emily B. Graham et al. Frontiers in Microbiology
- The Evolutionarily Stable Distribution of Fitness Effects
- (2015) D. P. Rice et al. GENETICS
- Quantitative evolutionary dynamics using high-resolution lineage tracking
- (2015) Sasha F. Levy et al. NATURE
- Crowded growth leads to the spontaneous evolution of semistable coexistence in laboratory yeast populations
- (2015) Evgeni M. Frenkel et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Rapid Quantification of Mutant Fitness in Diverse Bacteria by Sequencing Randomly Bar-Coded Transposons
- (2015) Kelly M. Wetmore et al. mBio
- EcoliNet: a database of cofunctional gene network for Escherichia coli
- (2015) Hanhae Kim et al. Database-The Journal of Biological Databases and Curation
- The Impact of Macroscopic Epistasis on Long-Term Evolutionary Dynamics
- (2014) B. H. Good et al. GENETICS
- Prochlorococcus: the structure and function of collective diversity
- (2014) Steven J. Biller et al. NATURE REVIEWS MICROBIOLOGY
- Global epistasis makes adaptation predictable despite sequence-level stochasticity
- (2014) S. Kryazhimskiy et al. SCIENCE
- Epistasis and Allele Specificity in the Emergence of a Stable Polymorphism in Escherichia coli
- (2014) J. Plucain et al. SCIENCE
- Ex Uno Plures: Clonal Reinforcement Drives Evolution of a Simple Microbial Community
- (2014) Margie Kinnersley et al. PLoS Genetics
- Long-Term Dynamics of Adaptation in Asexual Populations
- (2013) M. J. Wiser et al. SCIENCE
- Parallel Evolutionary Dynamics of Adaptive Diversification in Escherichia coli
- (2013) Matthew D. Herron et al. PLOS BIOLOGY
- Adaptation of Pseudomonas aeruginosa to the cystic fibrosis airway: an evolutionary perspective
- (2012) Anders Folkesson et al. NATURE REVIEWS MICROBIOLOGY
- Distribution of fixed beneficial mutations and the rate of adaptation in asexual populations
- (2012) B. H. Good et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Negative Epistasis Between Beneficial Mutations in an Evolving Bacterial Population
- (2011) A. I. Khan et al. SCIENCE
- Performance of modularity maximization in practical contexts
- (2010) Benjamin H. Good et al. PHYSICAL REVIEW E
- Eco-evolutionary feedbacks in community and ecosystem ecology: interactions between the ecological theatre and the evolutionary play
- (2009) D. M. Post et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Death and cannibalism in a seasonal environment facilitate bacterial coexistence
- (2008) Daniel E. Rozen et al. ECOLOGY LETTERS
- On Modularity Clustering
- (2008) U. Brandes et al. IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING
- Historical contingency and the evolution of a key innovation in an experimental population of Escherichia coli
- (2008) Z. D. Blount et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Microbial Engines That Drive Earth's Biogeochemical Cycles
- (2008) P. G. Falkowski et al. SCIENCE
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